add progeny dependency

saezlab · Mar 4, 2024 · fdc9990 · fdc9990
1 parent 6167296
commit fdc9990
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Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml
@@ -137,7 +137,7 @@ jobs:
           BiocManager::install(c("decoupleR", "SpatialExperiment"), ask = FALSE)
           install.packages(c("pkgdown", "sctransform"))
           install.packages(c("stringi", "ridge"), type="source", repos="https://cloud.r-project.org/")
-          BiocManager::install("OmnipathR", ask=FALSE)
+          BiocManager::install(c("OmnipathR", "progeny", ask=FALSE)
           install.packages(c("janitor", "reticulate", "Seurat", "SeuratObject", "tidyverse"))
 
           ## modified from pkgdown::deploy_to_branch

diff --git a/vignettes/FunctionalPipelinePathwayActivityLigands.Rmd b/vignettes/FunctionalPipelinePathwayActivityLigands.Rmd
@@ -43,6 +43,7 @@ library(tidyverse)
 # Pathways and annotation
 library(decoupleR)
 library(OmnipathR)
+library(progeny)
 
 # Cleaning names
 library(janitor)