Merge pull request #77 from rseng/update/analysis-2023-06-28

Update from update/analysis-2023-06-28
rseng · Jun 28, 2023 · dea889e · dea889e
2 parents 8526beb + b9ce576
commit dea889e
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Showing 28 changed files with 30,198 additions and 30,577 deletions.
diff --git a/_data/repos_counts_languages.json b/_data/repos_counts_languages.json
@@ -1,5 +1,5 @@
 {
-    "Python": 5302,
+    "Python": 5303,
     "R": 2158,
     "Cpp": 436,
     "Js": 1477,

diff --git a/_data/stats.json b/_data/stats.json
@@ -5,5 +5,5 @@
     "js_deps": 1477,
     "go_deps": 245,
     "total_repos": 4812,
-    "total_parsed": 2491
+    "total_parsed": 2492
 }
diff --git a/_repos/github/COMBINE-lab/pufferfish/CMakeLists.txt b/_repos/github/COMBINE-lab/pufferfish/CMakeLists.txt
@@ -250,6 +250,8 @@ if(NOT ${TBB_TARGET_EXISTED})
     if("${TBB_COMPILER}" STREQUAL "gcc")
         ## Don't know why it's a problem yet, but if we're using
         ## GCC, get rid of the DO_ITT_NOTIFY flag
+        ## This seems not to be essential anymore; consider 
+        ## deleting in the next release.
         # set(TBB_CXXFLAGS "${TBB_CXXFLAGS} -UDO_ITT_NOTIFY")
     endif()
 

diff --git a/_repos/github/COMBINE-lab/salmon/CMakeLists.txt b/_repos/github/COMBINE-lab/salmon/CMakeLists.txt
@@ -642,7 +642,7 @@ endif()
 message("Build system will fetch and build Intel Threading Building Blocks")
 message("==================================================================")
 # These are useful for the custom install step we'll do later
-set(TBB_SOURCE_DIR ${GAT_SOURCE_DIR}/external/oneTBB-2021.5.0)
+set(TBB_SOURCE_DIR ${GAT_SOURCE_DIR}/external/oneTBB-2021.9.0)
 set(TBB_INSTALL_DIR ${CMAKE_CURRENT_SOURCE_DIR}/external/install)
 
 if("${TBB_COMPILER}" STREQUAL "gcc")
@@ -655,9 +655,9 @@ set(TBB_CXXFLAGS "${TBB_CXXFLAGS} ${CXXSTDFLAG} ${SCHAR_FLAG}")
 
 ExternalProject_Add(libtbb
 DOWNLOAD_DIR ${CMAKE_CURRENT_SOURCE_DIR}/external
-DOWNLOAD_COMMAND curl -k -L https://github.com/oneapi-src/oneTBB/archive/refs/tags/v2021.5.0.tar.gz -o v2021.5.tar.gz &&
-${SHASUM} e5b57537c741400cf6134b428fc1689a649d7d38d9bb9c1b6d64f092ea28178a v2021.5.tar.gz &&
-tar -xzvf v2021.5.tar.gz
+DOWNLOAD_COMMAND curl -k -L  https://github.com/oneapi-src/oneTBB/archive/refs/tags/v2021.9.0.tar.gz -o v2021.9.tar.gz &&
+${SHASUM} 1ce48f34dada7837f510735ff1172f6e2c261b09460e3bf773b49791d247d24e v2021.9.tar.gz &&
+tar -xzvf v2021.9.tar.gz
 SOURCE_DIR ${TBB_SOURCE_DIR}
 INSTALL_DIR ${TBB_INSTALL_DIR}
 PATCH_COMMAND "${TBB_PATCH_STEP}"