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Merge pull request #117 from rseng/update/analysis-2024-04-17
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Update from update/analysis-2024-04-17
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vsoch authored Apr 17, 2024
2 parents a95b028 + f93162e commit 8de446b
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8 changes: 4 additions & 4 deletions _data/language_counts.json
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@@ -1,13 +1,13 @@
{
"unknown": 176,
"Python": 2225,
"Python": 2230,
"Jupyter Notebook": 448,
"Modelica": 1,
"Shell": 31,
"HTML": 92,
"Perl": 48,
"R": 667,
"C++": 563,
"R": 668,
"C++": 565,
"Java": 104,
"C": 332,
"Rust": 34,
Expand Down Expand Up @@ -37,7 +37,7 @@
"NCL": 1,
"Rich Text Format": 1,
"Cuda": 10,
"TeX": 21,
"TeX": 22,
"Ruby": 11,
"Mathematica": 23,
"OCaml": 2,
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84 changes: 81 additions & 3 deletions _data/repos.json
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Expand Up @@ -19932,6 +19932,57 @@
"normalizing-flows",
"variational-inference",
"computational-expensive-models"
],
"github/caimeng2/seesus": [
"classification",
"regular-expressions",
"sdg",
"sustainability",
"sustainability-developoment-goals",
"text-mining"
],
"github/ABSESpy/ABSESpy": [],
"github/lh3/bfc": [
"bioinformatics",
"genomics"
],
"github/alphapsa/PIPE": [],
"github/solislemuslab/minaa": [
"graal",
"graph-algorithm",
"graphlets",
"interaction-network",
"microbiome",
"network-alignment",
"orca"
],
"github/tesselle/aion": [
"archaeological-science",
"archaeology",
"r-package",
"chronology",
"time-series"
],
"github/GRChombo/GRDzhadzha": [],
"github/KenethGarcia/ClassiPyGRB": [
"grbs",
"machine-learning",
"machine-learning-algorithms",
"astrophysics",
"unsupervised-learning",
"unsupervised-machine-learning"
],
"github/CEMeNT-PSAAP/MCDC": [
"high-performance-computing",
"monte-carlo-simulation",
"neutron-transport",
"neutronics",
"nuclear-engineering",
"particle-transport",
"radiation-transport",
"parallel",
"python",
"simulation"
]
},
"language": {
Expand Down Expand Up @@ -25382,7 +25433,16 @@
"github/ewels/MultiQC": "JavaScript",
"github/pjcigan/pysymlog": "Python",
"github/pjcigan/obsplanning": "Python",
"github/desResLab/LINFA": "Python"
"github/desResLab/LINFA": "Python",
"github/caimeng2/seesus": "Python",
"github/ABSESpy/ABSESpy": "Python",
"github/lh3/bfc": "TeX",
"github/alphapsa/PIPE": "Python",
"github/solislemuslab/minaa": "C++",
"github/tesselle/aion": "R",
"github/GRChombo/GRDzhadzha": "C++",
"github/KenethGarcia/ClassiPyGRB": "Python",
"github/CEMeNT-PSAAP/MCDC": "Python"
},
"url": {
"gitlab/chiemotono/mdcontactcom": "https://gitlab.com/chiemotono/mdcontactcom",
Expand Down Expand Up @@ -30832,7 +30892,16 @@
"github/ewels/MultiQC": "https://github.com/MultiQC/MultiQC",
"github/pjcigan/pysymlog": "https://github.com/pjcigan/pysymlog",
"github/pjcigan/obsplanning": "https://github.com/pjcigan/obsplanning",
"github/desResLab/LINFA": "https://github.com/desResLab/LINFA"
"github/desResLab/LINFA": "https://github.com/desResLab/LINFA",
"github/caimeng2/seesus": "https://github.com/caimeng2/seesus",
"github/ABSESpy/ABSESpy": "https://github.com/ABSESpy/ABSESpy",
"github/lh3/bfc": "https://github.com/lh3/bfc",
"github/alphapsa/PIPE": "https://github.com/alphapsa/PIPE",
"github/solislemuslab/minaa": "https://github.com/solislemuslab/minaa",
"github/tesselle/aion": "https://github.com/tesselle/aion",
"github/GRChombo/GRDzhadzha": "https://github.com/GRTLCollaboration/GRDzhadzha",
"github/KenethGarcia/ClassiPyGRB": "https://github.com/KenethGarcia/ClassiPyGRB",
"github/CEMeNT-PSAAP/MCDC": "https://github.com/CEMeNT-PSAAP/MCDC"
},
"description": {
"gitlab/chiemotono/mdcontactcom": "",
Expand Down Expand Up @@ -36282,6 +36351,15 @@
"github/ewels/MultiQC": "Aggregate results from bioinformatics analyses across many samples into a single report.",
"github/pjcigan/pysymlog": "Utilities for plotting in matplotlib, plotly, etc. using a symmetric or signed log transform. This allows the plotting of positive and negative data with a pseudo-log axis scale or stretch. ",
"github/pjcigan/obsplanning": "Python tools for planning astronomical observations",
"github/desResLab/LINFA": "A Python library for variational inference with normalizing flow and annealing"
"github/desResLab/LINFA": "A Python library for variational inference with normalizing flow and annealing",
"github/caimeng2/seesus": "A Python package that identifies 17 Sustainable Development Goals and their 169 Targets in text, and classifies into social, environmental, and economic sustainability.",
"github/ABSESpy/ABSESpy": "An Agent-based Social-ecological System python framework for coupling human-nature researches. ",
"github/lh3/bfc": "High-performance error correction for Illumina resequencing data",
"github/alphapsa/PIPE": "PSF Imagette Photometric Extraction - PSF photometry for CHEOPS data",
"github/solislemuslab/minaa": "MiNAA aligns a pair of networks based their topologies and biologies.",
"github/tesselle/aion": ":stopwatch: Archaeological Time Series",
"github/GRChombo/GRDzhadzha": "A code to evolve matter on curved spacetimes with an analytic time and space dependence, e.g. black holes",
"github/KenethGarcia/ClassiPyGRB": "This repository contains all the updates, code, and documentation related to ClassiPyGRB.",
"github/CEMeNT-PSAAP/MCDC": "MC/DC: Monte Carlo Dynamic Code"
}
}
2 changes: 1 addition & 1 deletion _data/repos_counts_languages.json
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@@ -1,6 +1,6 @@
{
"Python": 6006,
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"Js": 1692,
"Go": 246
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6 changes: 3 additions & 3 deletions _data/stats.json
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@@ -1,9 +1,9 @@
{
"python_deps": 4961,
"cpp_deps": 441,
"r_deps": 2239,
"r_deps": 2241,
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}
4 changes: 2 additions & 2 deletions _repos/github/Pometry/Raphtory/requirements.txt
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Expand Up @@ -87,7 +87,7 @@ huggingface-hub==0.20.3
# transformers
hyperlink==21.0.0
# via twisted
idna==3.4
idna==3.7
# via
# anyio
# hyperlink
Expand Down Expand Up @@ -372,7 +372,7 @@ traitlets==5.9.0
# via
# ipython
# matplotlib-inline
transformers==4.37.2
transformers==4.38.0
# via sentence-transformers
triton==2.1.0
# via torch
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4 changes: 2 additions & 2 deletions _repos/github/parthenon-hpc-lab/parthenon/CMakeLists.txt
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Expand Up @@ -62,9 +62,9 @@ include(cmake/Format.cmake)
include(cmake/Lint.cmake)

# regression test reference data
set(REGRESSION_GOLD_STANDARD_VER 21 CACHE STRING "Version of gold standard to download and use")
set(REGRESSION_GOLD_STANDARD_VER 22 CACHE STRING "Version of gold standard to download and use")
set(REGRESSION_GOLD_STANDARD_HASH
"SHA512=e16b14272915b4607965e5900961402f6da96dc13da8ea3c3d213d61f82d3a1dded08c40a9ab644aa3409d93a045bba360a90a43dc289b24f525878f9ba50890"
"SHA512=c64f34b6841569c74c3918aa33d5c1fe6795b6ba124e25be7184c48f589ebe634062955e97969e68d252e59d8d0fce5d65e32b4252e2c2537f9f49ebfdf37ee0"
CACHE STRING "Hash of default gold standard file to download")
option(REGRESSION_GOLD_STANDARD_SYNC "Automatically sync gold standard files." ON)

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66 changes: 66 additions & 0 deletions _repos/github/tesselle/aion/DESCRIPTION
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Package: aion
Title: Archaeological Time Series
Version: 1.0.3.9000
Authors@R: c(
person("Nicolas", "Frerebeau", , "[email protected]", role = c("aut", "cre"),
comment = c(ORCID = "0000-0001-5759-4944", affiliation = "Université Bordeaux Montaigne")),
person("Joe", "Roe", , "[email protected]", role = "aut",
comment = c(ORCID = "0000-0002-1011-1244", affiliation = "Universität Bern")),
person("Brice", "Lebrun", , "[email protected]", role = "ctb",
comment = c(ORCID = "0000-0001-7503-8685", "Logo designer")),
person("Université Bordeaux Montaigne", role = "fnd"),
person("CNRS", role = "fnd")
)
Maintainer: Nicolas Frerebeau <[email protected]>
Description: A toolkit for archaeological time series. This package
provides a system of classes and methods to represent and work with
archaeological time series. Dates are represented as "rata die" and
can be converted to (virtually) any calendar defined by Reingold and
Dershowitz (2018) <doi:10.1017/9781107415058>. This packages offers a
simple API that can be used by other specialized packages.
License: GPL (>= 3)
URL: https://packages.tesselle.org/aion/,
https://github.com/tesselle/aion
BugReports: https://github.com/tesselle/aion/issues
Depends:
R (>= 3.3)
Imports:
arkhe (>= 1.6.0),
graphics,
grDevices,
methods
Suggests:
folio (>= 1.4.0),
knitr,
markdown,
rsvg,
svglite,
tinysnapshot,
tinytest
VignetteBuilder:
knitr
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Collate:
'AllClasses.R'
'AllGenerics.R'
'aion-internal.R'
'aion-package.R'
'calendar-gregorian.R'
'calendar-julian.R'
'calendar.R'
'coerce.R'
'convert.R'
'data.R'
'mutators.R'
'operators.R'
'plot.R'
'series.R'
'show.R'
'subset.R'
'time.R'
'validate.R'
'years.R'
'zzz.R'
18 changes: 18 additions & 0 deletions _repos/github/tesselle/aion/README.md
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---
title: github/tesselle/aion
layout: repo
tipue_search_active: true
exclude_from_search: true
---
# Software Credit

|Manager|Name|Credit|
|-------|----|------|
|DESCRIPTION|github/tesselle/aion|0.01|
|cran|[arkhe](https://packages.tesselle.org/arkhe/)|0.01|


> Note that credit values are rounded and expanded (so shared dependencies are represented as one record) and may not add to 1.0. Rounded values that hit zero are removed.

- Generated by [CiteLang](https://github.com/vsoch/citelang)
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14 changes: 14 additions & 0 deletions _repos/github/tesselle/aion/data.json
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@@ -0,0 +1,14 @@
{
"DESCRIPTION": {
"github/tesselle/aion": {
"credit": 0.01,
"url": null
}
},
"cran": {
"arkhe": {
"credit": 0.0099,
"url": "https://packages.tesselle.org/arkhe/"
}
}
}
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