geo unstable

rocker-org · Sep 20, 2020 · 606c29a · 606c29a
1 parent 2259a9a
commit 606c29a
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diff --git a/scripts/add_ubuntugis.sh b/scripts/add_ubuntugis.sh
@@ -5,7 +5,7 @@ set -e
 UBUNTUGIS_VERSION=${1:-${UBUNTUGIS_VERSION:-stable}}
 
 ## Force installs from SOURCE if using RStudio Package Manager Repository
-CRAN=${CRAN/"__linux__/bionic"/""}
+CRAN=${CRAN/"__linux__/focal"/""}
 echo "options(repos = c(CRAN = '${CRAN}'))" >> ${R_HOME}/etc/Rprofile.site
 
 

diff --git a/scripts/install_geospatial_unstable.sh b/scripts/install_geospatial_unstable.sh
@@ -1,83 +1,191 @@
-#!/bin/bash
-
-GDAL_VERSION=3.1.2
-GEOS_VERSION=3.8.0
-PROJ_VERSION=7.1.0
-#LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH
-
+##
+# ADAPTED FROM: osgeo/gdal:ubuntu-full
+# https://github.com/OSGeo/gdal/blob/master/gdal/docker/ubuntu-full/Dockerfile
+# This file is available at the option of the licensee under:
+# Public domain
+# or licensed under X/MIT (LICENSE.TXT) Copyright 2019 Even Rouault <[email protected]>
+
+
+# Derived from osgeo/proj by Howard Butler <[email protected]>
+# Derived from osgeo/gdal by Even Rouault <[email protected]>
+
+# Setup build env for PROJ
+apt-get update -y \
+    && DEBIAN_FRONTEND=noninteractive apt-get install -y --fix-missing --no-install-recommends \
+            software-properties-common build-essential ca-certificates \
+            git make cmake wget unzip libtool automake \
+            zlib1g-dev libsqlite3-dev pkg-config sqlite3 libcurl4-gnutls-dev \
+            libtiff5-dev \
+    && rm -rf /var/lib/apt/lists/*
+
+# Setup build env for GDAL
+apt-get update -y \
+    && DEBIAN_FRONTEND=noninteractive apt-get install -y --fix-missing --no-install-recommends \
+       libcharls-dev libopenjp2-7-dev libcairo2-dev \
+       python3-dev python3-numpy \
+       libpng-dev libjpeg-dev libgif-dev liblzma-dev libgeos-dev \
+       curl libxml2-dev libexpat-dev libxerces-c-dev \
+       libnetcdf-dev libpoppler-dev libpoppler-private-dev \
+       libspatialite-dev swig libhdf4-alt-dev libhdf5-serial-dev \
+       libfreexl-dev unixodbc-dev libwebp-dev libepsilon-dev \
+       liblcms2-2 libpcre3-dev libcrypto++-dev libdap-dev libfyba-dev \
+       libkml-dev libmysqlclient-dev libogdi-dev \
+       libcfitsio-dev openjdk-8-jdk libzstd-dev \
+       libpq-dev libssl-dev libboost-dev \
+       autoconf automake bash-completion libarmadillo-dev \
+       libopenexr-dev libheif-dev \
+    && rm -rf /var/lib/apt/lists/*
+
+# Build likbkea
+KEA_VERSION=1.4.13
+wget -q https://github.com/ubarsc/kealib/archive/kealib-${KEA_VERSION}.zip \
+    && unzip -q kealib-${KEA_VERSION}.zip \
+    && rm -f kealib-${KEA_VERSION}.zip \
+    && cd kealib-kealib-${KEA_VERSION} \
+    && cmake . -DBUILD_SHARED_LIBS=ON -DCMAKE_BUILD_TYPE=Release \
+        -DCMAKE_INSTALL_PREFIX=/usr -DHDF5_INCLUDE_DIR=/usr/include/hdf5/serial \
+        -DHDF5_LIB_PATH=/usr/lib/x86_64-linux-gnu/hdf5/serial -DLIBKEA_WITH_GDAL=OFF \
+    && make -j$(nproc) \
+    && make install DESTDIR="/build_thirdparty" \
+    && make install \
+    && cd .. \
+    && rm -rf kealib-kealib-${KEA_VERSION} \
+    && for i in /build_thirdparty/usr/lib/*; do strip -s $i 2>/dev/null || /bin/true; done \
+    && for i in /build_thirdparty/usr/bin/*; do strip -s $i 2>/dev/null || /bin/true; done
+
+# Build mongo-c-driver
+MONGO_C_DRIVER_VERSION=1.16.2
+mkdir mongo-c-driver \
+    && wget -q https://github.com/mongodb/mongo-c-driver/releases/download/${MONGO_C_DRIVER_VERSION}/mongo-c-driver-${MONGO_C_DRIVER_VERSION}.tar.gz -O - \
+        | tar xz -C mongo-c-driver --strip-components=1 \
+    && cd mongo-c-driver \
+    && mkdir build_cmake \
+    && cd build_cmake \
+    && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DENABLE_TESTS=NO -DCMAKE_BUILD_TYPE=Release \
+    && make -j$(nproc) \
+    && make install DESTDIR="/build_thirdparty" \
+    && make install \
+    && cd ../.. \
+    && rm -rf mongo-c-driver \
+    && rm /build_thirdparty/usr/lib/x86_64-linux-gnu/*.a \
+    && for i in /build_thirdparty/usr/lib/x86_64-linux-gnu/*; do strip -s $i 2>/dev/null || /bin/true; done \
+    && for i in /build_thirdparty/usr/bin/*; do strip -s $i 2>/dev/null || /bin/true; done
+
+# Build mongocxx
+MONGOCXX_VERSION=3.5.0
+mkdir mongocxx \
+    && wget -q https://github.com/mongodb/mongo-cxx-driver/archive/r${MONGOCXX_VERSION}.tar.gz -O - \
+        | tar xz -C mongocxx --strip-components=1 \
+    && cd mongocxx \
+    && mkdir build_cmake \
+    && cd build_cmake \
+    && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DBSONCXX_POLY_USE_BOOST=ON -DMONGOCXX_ENABLE_SLOW_TESTS=NO -DCMAKE_BUILD_TYPE=Release -DBUILD_VERSION=${MONGOCXX_VERSION} \
+    && make -j$(nproc) \
+    && make install DESTDIR="/build_thirdparty" \
+    && make install \
+    && cd ../.. \
+    && rm -rf mongocxx \
+    && for i in /build_thirdparty/usr/lib/x86_64-linux-gnu/*; do strip -s $i 2>/dev/null || /bin/true; done \
+    && for i in /build_thirdparty/usr/bin/*; do strip -s $i 2>/dev/null || /bin/true; done
+
+# Build tiledb
+TILEDB_VERSION=2.0.8
+mkdir tiledb \
+    && wget -q https://github.com/TileDB-Inc/TileDB/archive/${TILEDB_VERSION}.tar.gz -O - \
+        | tar xz -C tiledb --strip-components=1 \
+    && cd tiledb \
+    && mkdir build_cmake \
+    && cd build_cmake \
+    && ../bootstrap --prefix=/usr \
+    && make -j$(nproc) \
+    && make install-tiledb DESTDIR="/build_thirdparty" \
+    && make install-tiledb \
+    && cd ../.. \
+    && rm -rf tiledb \
+    && for i in /build_thirdparty/usr/lib/x86_64-linux-gnu/*; do strip -s $i 2>/dev/null || /bin/true; done \
+    && for i in /build_thirdparty/usr/bin/*; do strip -s $i 2>/dev/null || /bin/true; done
+
+# Build openjpeg
+OPENJPEG_VERSION=
+if test "${OPENJPEG_VERSION}" != ""; then ( \
+    wget -q https://github.com/uclouvain/openjpeg/archive/v${OPENJPEG_VERSION}.tar.gz \
+    && tar xzf v${OPENJPEG_VERSION}.tar.gz \
+    && rm -f v${OPENJPEG_VERSION}.tar.gz \
+    && cd openjpeg-${OPENJPEG_VERSION} \
+    && cmake . -DBUILD_SHARED_LIBS=ON  -DBUILD_STATIC_LIBS=OFF -DCMAKE_BUILD_TYPE=Release \
+        -DCMAKE_INSTALL_PREFIX=/usr \
+    && make -j$(nproc) \
+    && make install \
+    && mkdir -p /build_thirdparty/usr/lib/x86_64-linux-gnu \
+    && rm -f /usr/lib/x86_64-linux-gnu/libopenjp2.so* \
+    && mv /usr/lib/libopenjp2.so* /usr/lib/x86_64-linux-gnu \
+    && cp -P /usr/lib/x86_64-linux-gnu/libopenjp2.so* /build_thirdparty/usr/lib/x86_64-linux-gnu \
+    && for i in /build_thirdparty/usr/lib/x86_64-linux-gnu/*; do strip -s $i 2>/dev/null || /bin/true; done \
+    && cd .. \
+    && rm -rf openjpeg-${OPENJPEG_VERSION} \
+    ); fi
+
+apt-get update -y \
+    && apt-get install -y --fix-missing --no-install-recommends rsync ccache \
+    && rm -rf /var/lib/apt/lists/*
+RSYNC_REMOTE
+
+WITH_DEBUG_SYMBOLS=no
+
+# Build PROJ
+PROJ_VERSION=master
+PROJ_INSTALL_PREFIX=/usr/local
+/rocker_scripts/bh-proj.sh
+
+GDAL_VERSION=master
+GDAL_RELEASE_DATE
+GDAL_BUILD_IS_RELEASE
+
+# Build GDAL
+/rocker_scripts/bh-gdal.sh
+
+
+date
 
 apt-get update \
-  && apt-get install -y --no-install-recommends \
-    lbzip2 \
-    libdap-dev \
-    libexpat1-dev \
-    libfftw3-dev \
-    libfreexl-dev \
-    libgsl0-dev \
-    libglu1-mesa-dev \
-    libhdf4-alt-dev \
-    libhdf5-dev \
-    libkml-dev \
-    libnetcdf-dev \
-    libsqlite3-dev \
-    libssl-dev \
-    libtcl8.6 \
-    libtk8.6 \
-    libtiff5-dev \
-    libudunits2-dev \
-    libxerces-c-dev \
-    unixodbc-dev
-
-wget http://download.osgeo.org/gdal/${GDAL_VERSION}/gdal-${GDAL_VERSION}.tar.gz
-tar -xf gdal-${GDAL_VERSION}.tar.gz
-rm gdal-${GDAL_VERSION}.tar.gz
-
-wget http://download.osgeo.org/geos/geos-${GEOS_VERSION}.tar.bz2
-tar -xf geos-${GEOS_VERSION}.tar.bz2
-rm geos-${GEOS_VERSION}.tar.bz2
-
-wget http://download.osgeo.org/proj/proj-${PROJ_VERSION}.tar.gz
-tar -xf proj-${PROJ_VERSION}.tar.gz
-rm proj-${PROJ_VERSION}.tar.gz
-
-
-## Install proj
-cd /proj*
-./configure
-make
-make install
-
-
-
-## Install libgeos
-cd /geos*
-./configure
-make
-make install
-
-## Configure options loosely based on homebrew gdal2 https://github.com/OSGeo/homebrew-osgeo4mac/blob/master/Formula/gdal2.rb
-cd /gdal*
-./configure \
-    --with-curl \
-    --with-dods-root=/usr \
-    --with-freexl \
-    --with-geos \
-    --with-geotiff \
-    --with-hdf4 \
-    --with-hdf5=/usr/lib/x86_64-linux-gnu/hdf5/serial \
-    --with-libjson-c \
-    --with-netcdf \
-    --with-odbc \
-    --without-grass \
-    --without-libgrass
-make
-make install
-
-cd ..
-## Cleanup gdal & geos installation
-rm -rf gdal-* geos-*
-
-CRAN_SOURCE=`echo ${CRAN} | sed s/__linux__\/focal/`
-install2.r -e -r $CRAN_SOURCE lwgeom rgdal rgeos proj4 sf stars
-
-
+# PROJ dependencies
+    && DEBIAN_FRONTEND=noninteractive apt-get install -y \
+        libsqlite3-0 libtiff5 libcurl4 \
+        wget curl unzip ca-certificates \
+# GDAL dependencies
+    && DEBIAN_FRONTEND=noninteractive apt-get install -y \
+        libcharls2 libopenjp2-7 libcairo2 python3-numpy \
+        libpng16-16 libjpeg-turbo8 libgif7 liblzma5 libgeos-3.8.0 libgeos-c1v5 \
+        libxml2 libexpat1 \
+        libxerces-c3.2 libnetcdf-c++4 netcdf-bin libpoppler97 libspatialite7 gpsbabel \
+        libhdf4-0-alt libhdf5-103 libhdf5-cpp-103 poppler-utils libfreexl1 unixodbc libwebp6 \
+        libepsilon1 liblcms2-2 libpcre3 libcrypto++6 libdap25 libdapclient6v5 libfyba0 \
+        libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1 \
+        libmysqlclient21 libogdi4.1 libcfitsio8 openjdk-8-jre \
+        libzstd1 bash bash-completion libpq5 libssl1.1 \
+        libarmadillo9 libpython3.8 libopenexr24 libheif1 \
+        python-is-python3 \
+    # Workaround bug in ogdi packaging
+    && ln -s /usr/lib/ogdi/libvrf.so /usr/lib \
+    && rm -rf /var/lib/apt/lists/*
+
+## Attempt to order layers starting with less frequently varying ones
+#
+#COPY --from=builder  /build_thirdparty/usr/ /usr/
+#
+#PROJ_DATUMGRID_LATEST_LAST_MODIFIED
+#PROJ_INSTALL_PREFIX=/usr/local
+#COPY --from=builder  /build${PROJ_INSTALL_PREFIX}/share/proj/ ${PROJ_INSTALL_PREFIX}/share/proj/
+#COPY --from=builder  /build${PROJ_INSTALL_PREFIX}/include/ ${PROJ_INSTALL_PREFIX}/include/
+#COPY --from=builder  /build${PROJ_INSTALL_PREFIX}/bin/ ${PROJ_INSTALL_PREFIX}/bin/
+#COPY --from=builder  /build${PROJ_INSTALL_PREFIX}/lib/ ${PROJ_INSTALL_PREFIX}/lib/
+#ldconfig \
+#    && projsync --system-directory --all
+#
+#COPY --from=builder  /build/usr/share/gdal/ /usr/share/gdal/
+#COPY --from=builder  /build/usr/include/ /usr/include/
+#COPY --from=builder  /build_gdal_python/usr/ /usr/
+#COPY --from=builder  /build_gdal_version_changing/usr/ /usr/
+#
+#ldconfig
+#