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Add Python 3.13 support. Deprecate 3.8 support. #208

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merged 3 commits into from
Nov 20, 2024
Merged

Add Python 3.13 support. Deprecate 3.8 support. #208

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6693cdf
Deprecate Python 3.8 support and add support for Python 3.13
rhpvorderman Nov 20, 2024
f4b6a4c
Update setup-python action
rhpvorderman Nov 20, 2024
10e1672
Add Python support changes to changelog
rhpvorderman Nov 20, 2024
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24 changes: 12 additions & 12 deletions .github/workflows/ci.yml
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Expand Up @@ -28,10 +28,10 @@ jobs:
- uses: actions/checkout@v4
with:
submodules: recursive
- name: Set up Python 3.8
uses: actions/setup-python@v2.2.1
- name: Set up Python 3.9
uses: actions/setup-python@v4
with:
python-version: 3.8
python-version: "3.9"
- name: Install tox
run: pip install --upgrade tox
- name: Run tox -e ${{ matrix.tox_env }}
Expand All @@ -42,33 +42,33 @@ jobs:
strategy:
matrix:
python-version:
- "3.8"
- "3.9"
- "3.10"
- "3.11"
- "3.12"
- "3.13"
os: ["ubuntu-latest"]
include:
# MacOS ARM m1
- os: "macos-latest"
python-version: "3.8"
python-version: "3.9"
- os: "macos-latest"
python-version: "3.12"
python-version: "3.13"
# MacOS x86-64
- os: "macos-13"
python-version: "3.8"
python-version: "3.9"
- os: "macos-13"
python-version: "3.12"
python-version: "3.13"
- os: "windows-latest"
python-version: "3.8"
python-version: "3.9"
- os: "windows-latest"
python-version: "3.12"
python-version: "3.13"
steps:
- uses: actions/checkout@v4
with:
submodules: recursive
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2.2.1
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install tox
Expand Down Expand Up @@ -115,7 +115,7 @@ jobs:
- uses: actions/checkout@v4
with:
submodules: recursive
- uses: actions/setup-python@v2
- uses: actions/setup-python@v4
name: Install Python
- name: Install cibuildwheel twine wheel
run: python -m pip install cibuildwheel twine wheel
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2 changes: 2 additions & 0 deletions CHANGELOG.rst
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Expand Up @@ -9,6 +9,8 @@ Changelog

version 0.13.0-dev
------------------
+ Python 3.13 support was added.
+ Python 3.8 is no longer supported.
+ Only sample the first 100 bp from the beginning and end of the read by
default for the overrepresented sequences analysis. This prevents a lot of
false positives from common human genome repeats. The amount of base pairs
Expand Down
2 changes: 1 addition & 1 deletion pyproject.toml
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Expand Up @@ -21,11 +21,11 @@ license = {text = "AGPL-v3.0"}
classifiers = [
"Programming Language :: Python :: 3 :: Only",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3.13",
"Development Status :: 4 - Beta",
"License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)",
"Topic :: Scientific/Engineering :: Bio-Informatics",
Expand Down
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