Merge pull request #208 from rhpvorderman/issue207

Add Python 3.13 support. Deprecate 3.8 support.
rhpvorderman · Nov 20, 2024 · 7ae8584 · 7ae8584
2 parents 5a5da44 + 10e1672
commit 7ae8584
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Showing 3 changed files with 15 additions and 13 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -28,10 +28,10 @@ jobs:
       - uses: actions/checkout@v4
         with:
           submodules: recursive
-      - name: Set up Python 3.8
-        uses: actions/setup-python@v2.2.1
+      - name: Set up Python 3.9
+        uses: actions/setup-python@v4
         with:
-          python-version: 3.8
+          python-version: "3.9"
       - name: Install tox
         run: pip install --upgrade tox
       - name: Run tox -e ${{ matrix.tox_env }}
@@ -42,33 +42,33 @@ jobs:
     strategy:
       matrix:
         python-version:
-          - "3.8"
           - "3.9"
           - "3.10"
           - "3.11"
           - "3.12"
+          - "3.13"
         os: ["ubuntu-latest"]
         include:
           # MacOS ARM m1
           - os: "macos-latest"
-            python-version: "3.8"
+            python-version: "3.9"
           - os: "macos-latest"
-            python-version: "3.12"
+            python-version: "3.13"
           # MacOS x86-64
           - os: "macos-13"
-            python-version: "3.8"
+            python-version: "3.9"
           - os: "macos-13"
-            python-version: "3.12"
+            python-version: "3.13"
           - os: "windows-latest"
-            python-version: "3.8"
+            python-version: "3.9"
           - os: "windows-latest"
-            python-version: "3.12"
+            python-version: "3.13"
     steps:
       - uses: actions/checkout@v4
         with:
           submodules: recursive
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v2.2.1
+        uses: actions/setup-python@v4
         with:
           python-version: ${{ matrix.python-version }}
       - name: Install tox
@@ -115,7 +115,7 @@ jobs:
       - uses: actions/checkout@v4
         with:
           submodules: recursive
-      - uses: actions/setup-python@v2
+      - uses: actions/setup-python@v4
         name: Install Python
       - name: Install cibuildwheel twine wheel
         run: python -m pip install cibuildwheel twine wheel

diff --git a/CHANGELOG.rst b/CHANGELOG.rst
@@ -9,6 +9,8 @@ Changelog
 
 version 0.13.0-dev
 ------------------
++ Python 3.13 support was added.
++ Python 3.8 is no longer supported.
 + Only sample the first 100 bp from the beginning and end of the read by
   default for the overrepresented sequences analysis. This prevents a lot of
   false positives from common human genome repeats. The amount of base pairs

diff --git a/pyproject.toml b/pyproject.toml
@@ -21,11 +21,11 @@ license = {text = "AGPL-v3.0"}
 classifiers = [
         "Programming Language :: Python :: 3 :: Only",
         "Programming Language :: Python :: 3",
-        "Programming Language :: Python :: 3.8",
         "Programming Language :: Python :: 3.9",
         "Programming Language :: Python :: 3.10",
         "Programming Language :: Python :: 3.11",
         "Programming Language :: Python :: 3.12",
+        "Programming Language :: Python :: 3.13",
         "Development Status :: 4 - Beta",
         "License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)",
         "Topic :: Scientific/Engineering :: Bio-Informatics",