Basic workflow for RNA-seq analysis.
Work-in-progress compilation of various commands and tools intended for an RNA-seq analysis workflow, largely based on Michael Love's Bioconductor workflow.
Attempt to run each command individually or in blocks after editing to match your own data architecture.
Archive of automated pipeline for RNA-seq quality control and Cole Trapnell's Tuxedo Suite analysis software. Generally considered outdated. This is an archive. Do not use for quantification purposes.