Merge pull request #16 from rapidsurveys:dev

setup quarto; fix #2; fix #3; fix #4; fix #5; fix #6; fix #7; fix #9

.Rprofile

@@ -0,0 +1 @@
+source("renv/activate.R")

.github/workflows/netlify.yaml

@@ -0,0 +1,55 @@
+name: Test book render
+
+on:
+  pull_request:
+    branches: [main, master]
+  workflow_dispatch:
+
+jobs:
+  test-book-render:
+    runs-on: ubuntu-latest
+    container: rocker/tidyverse:4.4.2
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Install system dependencies
+        run: |
+          apt-get update && apt-get install -y --no-install-recommends \
+          libxt6 libglpk-dev gh curl jq
+
+      - name: Set up Quarto
+        uses: quarto-dev/quarto-actions/setup@v2
+        with:
+          tinytex: true
+
+      - name: Install packages from renv.lock (with cache)
+        if: ${{ !env.ACT }}  
+        uses: r-lib/actions/setup-renv@v2
+        with:
+          cache-version: 2
+
+      - name: Install packages from renv.lock (local, no cache)
+        if: ${{ env.ACT }}  
+        run: |
+          renv::restore()
+        shell: Rscript {0}
+
+      - name: Render document
+        run: quarto render
+
+      - name: Deploy to Netlify
+        uses: nwtgck/[email protected]
+        with:
+          publish-dir: './_site'
+          production-branch: main
+          github-token: ${{ secrets.GITHUB_TOKEN }}
+          deploy-message:
+            'Deploy from GHA: ${{ github.event.pull_request.title || github.event.head_commit.message }} (${{ github.sha }})'
+          # these default to 'true'
+          enable-commit-comment: false
+          enable-github-deployment: false
+        env:
+          NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
+          NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}

.github/workflows/publish.yaml

@@ -0,0 +1,38 @@
+on:
+  workflow_dispatch:
+  push:
+    branches: main
+
+name: Quarto Publish
+
+jobs:
+  build-deploy:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+
+      - name: Set up Quarto
+        uses: quarto-dev/quarto-actions/setup@v2
+
+      - name: Install tinytex
+        run: quarto install tinytex
+
+      - name: Install R
+        uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: '4.4.2'
+
+      - name: Install R Dependencies
+        uses: r-lib/actions/setup-renv@v2
+        with:
+          cache-version: 1
+
+      - name: Render and Publish
+        uses: quarto-dev/quarto-actions/publish@v2
+        with:
+          target: gh-pages
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.gitignore

@@ -3,3 +3,7 @@
 .RData
 .Ruserdata
 .DS_Store
+
+
+/_site/
+/.quarto/

09-references.qmd

@@ -0,0 +1 @@
+# References

README.md

@@ -1,8 +1,4 @@
-# Rapid Assessment Method for Older People (RAM-OP): The Manual <img src="figures/ramOP.png" width="200px" align="right" />
-
-[![Travis-CI Build Status](https://travis-ci.org/rapidsurveys/ramOPmanual.svg?branch=master)](https://travis-ci.org/rapidsurveys/ramOPmanual)
-[![AppVeyor Build Status](https://ci.appveyor.com/api/projects/status/github/rapidsurveys/ramOPmanual?branch=master&svg=true)](https://ci.appveyor.com/project/rapidsurveys/ramOPmanual)
-[![DOI](https://zenodo.org/badge/125880132.svg)](https://zenodo.org/badge/latestdoi/125880132)
+# Rapid Assessment Method for Older People (RAM-OP): The Manual <img src="images/rapidsurveys.png" width="200px" align="right" />
 
 [HelpAge International](http://www.helpage.org), [VALID International](http://www.validinternational.org), and [Brixton Health](http://www.brixtonhealth.com), with financial assistance from the [Humanitarian Innovation Fund (HIF)](http://www.elrha.org/hif/home/), have developed a **Rapid Assessment Method for Older People (RAM-OP)** that provides accurate and reliable estimates of the needs of older people. The method uses simple procedures, in a short time frame (i.e. about two weeks including training, data collection, data entry, and data analysis), and at considerably lower cost than other methods. The **RAM-OP** method is based on the following principles:
 

_quarto.yml

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+project:
+  type: book
+  output-dir: _site
+
+book:
+  title: Rapid Assessment Method for Older People (RAM-OP)
+  subtitle: The Manual
+  author:
+    - Pascale Fritsch
+    - Ernest Guevarra
+    - Katja Siling
+    - Mark Myatt
+  date: last-modified
+  date-format: "DD MMMM YYYY"
+  chapters:
+    - index.qmd
+    - 02-sampling.qmd
+    - 03-indicators.qmd
+    - 04-questionnaire.qmd
+    - 05-datasets.qmd
+    - 06-practical.qmd
+    - 07-ram_op_software.qmd
+    - 08-conclusion.qmd
+    - 09-references.qmd
+  cover-image: figures/coverImage.jpg
+  search: true
+  repo-url: https://github.com/rapidsurveys/ramOPmanual/
+  repo-actions: [edit]
+  downloads: [pdf, epub]
+  #sharing: [mastodon, bluesky, linkedin]
+  google-analytics: 
+    tracking-id: "G-SE438KE5DS"
+    anonymize-ip: true
+
+bibliography: references.bib
+
+format:
+  html:
+    theme: cosmo
+    highlight-style: breeze
+  # pdf:
+  #   documentclass: scrreprt
+  #   highlight-style: breeze
+  # epub:
+  #   cover-image: figures/coverImage.jpg
+  #   highlight-style: breeze