Code to take DFAX series from atomistic to coarsegrained (and possibly run some analysis and data collection)
Flowchart:
(1) Create a topology file by using DFAG & martinize.py and merging the two results
(2) Transform topology file into VOTCA-usable form
(3) Use VOTCA to get data on bonds, angles, and dihedrals from atomistic system
(4) Create tabulated potentials and run a short (~30 ns) CG run
(5) Do analysis of resultant CG run
(6) Assuming it's fine, move to doing long production runs