scantop scans sequences for instances of motifs and print out the top ones.
Usage: `scantop <ace_file> <motif_number> <sequence_file> <background_GC> <site_count>
- ace_file: AlignACE output file with motifs
- motif_number: Motif number within ace_file to use
- sequence_file: File with sequences to scan (FASTA format)
- background_GC: Background GC content (should be between 0 and 1)
- site_count: Number of top scoring instances to output per sequence