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Can't install via conda for Python 3.11 #1202

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Shruteek opened this issue Jun 30, 2023 · 3 comments
Closed

Can't install via conda for Python 3.11 #1202

Shruteek opened this issue Jun 30, 2023 · 3 comments

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@Shruteek
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I am trying to install pysam on a Ubuntu virtual machine. I have Python 3.11 (latest) and am attempting to install pysam in a miniconda environment, specifically running the command:
conda install pysam -c bioconda -n sgRNA
To install pysam via bioconda. When I do this, the initial and flexible solver fails, with the following error message:
temp

@jmarshall
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Bioconda does not yet make Python 3.11 builds, which is a bioconda issue that has nothing to do with pysam. See bioconda/bioconda-recipes#37805.

If you want to use pysam with Python 3.11, you should install via pip or build it yourself.

(Duplicate of #1191.)

@jmarshall jmarshall closed this as not planned Won't fix, can't repro, duplicate, stale Jun 30, 2023
@Shruteek
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Thank you so much, @jmarshall - I used pip instead, and it worked! You just saved me a lot of trouble!

@jmarshall jmarshall changed the title Issue Installing Pysam on Ubuntu machine Can't install via conda for Python 3.11 Jul 27, 2023
@jmarshall jmarshall pinned this issue Jul 27, 2023
@jmarshall
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As of this month, bioconda now provides pysam for Python 3.11 and 3.12. See bioconda/bioconda-recipes#33333 (comment).

@jmarshall jmarshall unpinned this issue Jun 25, 2024
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