Create deploy.yml and myst.yml, update environment.yml

.github/workflows/deploy.yml

@@ -0,0 +1,46 @@
+# This file was created automatically with `myst init --gh-pages` 🪄 💚
+
+name: MyST GitHub Pages Deploy
+on:
+  push:
+    # Runs on pushes targeting the default branch
+    branches: [main]
+env:
+  # `BASE_URL` determines the website is served from, including CSS & JS assets
+  # You may need to change this to `BASE_URL: ''`
+  BASE_URL: /${{ github.event.repository.name }}
+
+# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+# Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued.
+# However, do NOT cancel in-progress runs as we want to allow these production deployments to complete.
+concurrency:
+  group: 'pages'
+  cancel-in-progress: false
+jobs:
+  deploy:
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - name: Setup Pages
+        uses: actions/configure-pages@v3
+      - uses: actions/setup-node@v4
+        with:
+          node-version: 18.x
+      - name: Install MyST Markdown
+        run: npm install -g mystmd
+      - name: Build HTML Assets
+        run: myst build --html
+      - name: Upload artifact
+        uses: actions/upload-pages-artifact@v1
+        with:
+          path: './_build/html'
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v2

environment.yml

@@ -31,6 +31,7 @@ dependencies:
   - jupyterlab
   - jupyter_server
   - globus-compute-sdk
+  - mystmd
   - ipywidgets
   - pip
   - sphinx-pythia-theme

myst.yml

@@ -0,0 +1,41 @@
+# See docs at: https://mystmd.org/guide/frontmatter
+version: 1
+extends:
+  - https://raw.githubusercontent.com/projectpythia-mystmd/pythia-config/main/pythia.yml
+project:
+  id: e2f37f9f-71cd-417e-8302-3fb52caa76c4
+  title: CMIP6 Cookbook
+  # title:
+  # description:
+  # keywords: []
+  # authors: []
+  github: https://github.com/projectpythia-mystmd/cmip6-cookbook
+  authors:
+    - name: Ryan Abernathey
+    - name: Henri Drake
+    - name: Robert Ford
+  copyright: '2024'
+  # To autogenerate a Table of Contents, run "myst init --write-toc"
+  toc:
+    # Auto-generated by `myst init --write-toc`
+    - file: README.md
+    - title: Preamble
+      children:
+        - file: notebooks/how-to-cite.md
+    - title: Foundations
+      children:
+        - file: notebooks/foundations/intake-esm.ipynb
+        - file: notebooks/foundations/google-cloud-basic.ipynb
+        - file: notebooks/foundations/esgf-opendap.ipynb
+    - title: Example workflows
+      children:
+        - file: notebooks/example-workflows/ecs-cmip6.ipynb
+        - file: notebooks/example-workflows/gmst.ipynb
+        - file: notebooks/example-workflows/precip-freq.ipynb
+        - file: notebooks/example-workflows/xesmf-ohu.ipynb
+
+site:
+  template: book-theme
+  # options:
+  #   favicon: favicon.ico
+  #   logo: site_logo.png