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dipy v 1.1.1 not comaptible #91

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ShivyaGupta14 opened this issue Jul 8, 2024 · 0 comments
Open

dipy v 1.1.1 not comaptible #91

ShivyaGupta14 opened this issue Jul 8, 2024 · 0 comments

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@ShivyaGupta14
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Hello,
I'm trying to do pip install dipy==1.1.1 outside the env it's working and installing dipy-v1.1.1, but same when I'm changing the environment.yml with the dipy==1.1.1 is throwing me the error, moreover, if I'm installing the latest version of dipy using the environment.yml, and activate an environment, after that as well the command pip install dipy==1.1.1 is throwing me errors.

By any chance, do you have any environment.yml which follows all the required versions in such a way that it won't throw any error.

Because, in the dipy latest version file you shared QballBaseModel consist of calculating the value of L = -l_values x (l_values+1), while in the current lib/rish.py code in the dMRIharmonization, they are calling QballModel, and then using the variable (qb_model) which stores the QballModel Output calculates the value of L = qb_model.n x (qb_model.n + 1) and then after that you are taking L**2 (square of L, store in L) which goes for further calculations.

Since, I'm changing the old calculation of L by the new one, the code is running perfectly without any single error, but these are not giving me the preferred output as of Mean_TAR_FA.nii.gz.

Please let me know if some of the following things which I think could make difference:

1) Does this change of calculating value of L is wrong?
2) The config file parameters really plays important role while running harmonization.py file?
3) Do we need the versions you mentioned as it is for all the libraries? Because none of them work together for python and other libraries!

Thank you so much, and please tell me how I can move forward with this.
it would be great if there would be any containerized version that would be compatible with all.

Thanks,
Shivya Gupta

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