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Bonebase Datacenter Files
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@pmaye1
pmaye1 committed Oct 15, 2023
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125 changes: 125 additions & 0 deletions app.py
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import dash
from dash import dcc
from dash import html, callback
import dash_bootstrap_components as dbc
from dash.dependencies import Input, Output
from flask import Flask

server = Flask(__name__)

app = dash.Dash(__name__,server=server, use_pages=True, external_stylesheets=[dbc.themes.BOOTSTRAP],suppress_callback_exceptions=True,
meta_tags=[{'name': 'viewport', 'content': 'width=device-width, initial-scale=1.0'}])



app.title='Datacenter | Bonebase'

Navbar=[
dbc.NavItem(dbc.NavLink("Home", href="https://bonebase.lab.uconn.edu/",style={'color':'white'})),
dbc.NavItem(dbc.NavLink('Datacenter Home', href="/",style={'color':'white'})),
dbc.NavItem(dbc.NavLink('Project1', href="/Project1",style={'color':'white'})),
dbc.NavItem(dbc.NavLink('Project2', href="/Project2",style={'color':'white'})),
dbc.NavItem(dbc.NavLink("Project Information", href="https://bonebase.lab.uconn.edu/projects-data/",style={'color':'white'})),
dbc.NavItem(dbc.NavLink("Data Interpretation", href="https://bonebase.lab.uconn.edu/projects-data/interpretation-of-data/",style={'color':'white'})),
dbc.NavItem(dbc.NavLink("Contact Us", href="https://bonebase.lab.uconn.edu/contact_us/",style={'color':'white'})),
]


Nav1=dbc.Nav(Navbar,pills=True,
style={'text-align':'center','fontSize': 15,'border-color':"white", 'font-weight':'normal','font-family':'arial'}),



app.layout = html.Div([ dbc.Container([

dbc.Row([
dbc.Col([

html.A(
dbc.Row([
dbc.Col([

(html.Img(src='/assets/uconn.png',
style={'height': '7.5%', 'margin-top':20},
) )
])

], style={'background-color':'#000e2f',
'padding-left':1000, 'margin-left':-1000, 'margin-right':-500,'padding-right':0,'height':60}
),href="https://health.uconn.edu/"),
html.A(
dbc.Row([
dbc.Col([
html.Br(),
html.P('CENTER FOR REGENERATIVE MEDICINE AND SKELETAL DEVELOPMENT',
style={'textAlign': 'left', 'fontFamily': 'Segoe UI Emoji', 'color':'#989898', 'font-size':11,
'letter-spacing':2, 'line-height':1,'margin-top':10}),

]),
], style={'background-color':'#04305E','padding-left':1000, 'margin-left':-1000, 'margin-right':-500,
'padding-right':-500,'height':50,'border-top':1,'border-top-style': 'solid','border-top-color':'#989898'}
),href='https://dentalmedicine.uconn.edu/divisions/center-for-regenerative-medicine-and-skeletal-development/',className="text-decoration-none"
),
html.A(
dbc.Row([
dbc.Col([

html.H6('Bonebase', style={'textAlign': 'left', 'fontFamily': "Helvetica", 'color': 'white',
"font-size":20, "font-weight":'550','line-height':15,'margin-top':0}),
],style={'justify':'center'})
], style={'background-color':'#04305E','padding-left':1000, 'margin-left':-1000, 'margin-right':-500,
'padding-right':-500,'height':25}
), href='https://bonebase.lab.uconn.edu/',className="text-decoration-none"),

dbc.Row([
dbc.Col([

html.H6('Welcome to the Bonebase Datacenter', style={'textAlign': 'left', 'fontFamily': "Verdana", 'color': 'white',
"font-size":18, "font-weight":'normal','line-height':15,'margin-top':5}),
])
], style={'background-color':'#04305E','padding-left':1000, 'margin-left':-1000, 'margin-right':-500,
'padding-right':-500,'height':30}, justify='end',
),

dbc.Row([
dbc.Col([ html.Div(Nav1)


# dbc.Nav( children=[
# dbc.NavLink("Home", href="https://bonebase.lab.uconn.edu/",style={'color':'white'}),
# dbc.NavLink('Datacenter Home', href="/",style={'color':'white'}),
# dbc.NavLink('Project1', href="/Project1",style={'color':'white'}),
# dbc.NavLink('Project2', href="/Project2",style={'color':'white'}),
# dbc.NavLink("Project Information", href="https://bonebase.lab.uconn.edu/projects-data/",style={'color':'white'}),
# dbc.NavLink("Data Interpretation", href="https://bonebase.lab.uconn.edu/projects-data/interpretation-of-data/",style={'color':'white'}),
# dbc.NavLink("Contact Us", href="https://bonebase.lab.uconn.edu/contact_us/",style={'color':'white'}),
# ], pills=True,style={'text-align':'center','fontSize': 15,'border-color':"white",
# 'font-weight':'normal','font-family':'arial'}),


])
], style={'background-color':'#04305E','padding-left':1000, 'margin-left':-1000, 'margin-right':-500,
'padding-right':0,'height':40}, justify='end',
),


# content of each page
dbc.Row([
html.Div(children=[
dash.page_container]
),

# dcc.Location(id='url', refresh=True),

],justify='center'),


],md=10),
],justify='center') #style={'overflow-x':'hidden'}

])
])

if __name__ == '__main__':
app.run(debug=True)
#app.run_server(debug=True)
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6 changes: 6 additions & 0 deletions datasets/Het50/Control_female_Cortical_average.csv
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BMD,Ct.Ar,Ct.Ar/Tt.Ar,Ct.Po,Ct.Th,Ec.Pm,I_max,I_max/C_max,I_min,I_min/C_min,J,Length,Ma.Ar,Po.V,Ps.Pm,SampNo,Sample Name,TMD,Tt.Ar,exp_name,gene_symbol
1210.3024875,0.637165,0.4269910873261256,0.002322500000000005,0.15842499999999998,3.373911927980977,0.16753,0.19496624999999998,0.08751874999999999,0.1468075,0.25505125,14.33,0.8545887499999999,0.001488749999999997,4.375630814069794,,Average ,1304.6670875,1.4932425,CCC_E01.xlsx,CCC_E01.xlsx
1213.6325000000002,0.64846875,0.42073006250575695,0.0024100000000000094,0.158825,3.4296079753650295,0.1754175,0.20194125,0.09316125,0.15228875,0.26857875000000003,14.61,0.8898662499999999,0.0015700000000000297,4.431935323218658,,Average ,1306.705225,1.539905,CCC_E03.xlsx,CCC_E03.xlsx
1240.7543,0.69239,0.4350234954855826,0.0027162500000000173,0.16865,3.450918166829225,0.19486,0.22062625000000002,0.10083624999999999,0.16356375,0.29569749999999995,14.546249999999999,0.9017912499999999,0.0018900000000000028,4.515832434601428,,Average ,1336.5392124999998,1.5960712499999998,CCC_E04.xlsx,CCC_E04.xlsx
1214.1862375,0.6830075,0.4250691040077561,0.0021800000000000014,0.1633125,3.4982388729749028,0.19218250000000003,0.2156925,0.10219125000000001,0.16583124999999999,0.29437499999999994,14.4525,0.9230324999999999,0.0014875000000000166,4.528910837527271,,Average ,1304.3782125,1.6075274999999998,CCC_E05.xlsx,CCC_E05.xlsx
1223.1652750000003,0.6870225,0.4320734955600881,0.0021987499999999993,0.166375,3.4562516740447125,0.190115,0.21429499999999999,0.1010775,0.16377499999999998,0.29119249999999997,14.55857142857143,0.90236,0.0015125,4.505903389742991,,Average ,1314.4887124999998,1.5908950000000002,CCC_E06.xlsx,CCC_E06.xlsx
6 changes: 6 additions & 0 deletions datasets/Het50/Control_male_Cortical_average.csv
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BMD,Ct.Ar,Ct.Ar/Tt.Ar,Ct.Po,Ct.Th,Ec.Pm,I_max,I_max/C_max,I_min,I_min/C_min,J,Length,Ma.Ar,Po.V,Ps.Pm,SampNo,Sample Name,TMD,Tt.Ar,exp_name,gene_symbol
1224.3689125,0.72356,0.43477319854853475,0.0021049999999999958,0.1694625,3.580062051369611,0.22263750000000002,0.23391125,0.10418,0.174425,0.326815,14.551428571428573,0.940015,0.0015237500000000181,4.650303056096617,,Average ,1311.4956499999998,1.66509875,CCC_E01.xlsx,CCC_E01.xlsx
1232.7221124999999,0.7755162500000001,0.433324339631822,0.002532499999999993,0.178125,3.6916593889364604,0.25155125,0.25633625,0.1267075,0.19852375,0.37826,14.72875,1.00963375,0.001967499999999997,4.824886586289992,,Average ,1321.3654625,1.7871175,CCC_E03.xlsx,CCC_E03.xlsx
1217.6446125,0.75971125,0.41997962282029744,0.0024487499999999857,0.17074999999999999,3.7626104427923996,0.25548125,0.2573875,0.12235,0.19300375,0.3778325,14.651428571428571,1.0470762500000002,0.0018500000000000183,4.849914075143388,,Average ,1306.4163375,1.8086375000000001,CCC_E04.xlsx,CCC_E04.xlsx
1218.2143500000002,0.7950349999999999,0.42211547406701316,0.0029462499999999975,0.17357499999999998,3.8733423220704446,0.28139375,0.27639125,0.13370749999999998,0.20913624999999997,0.41509874999999996,14.69125,1.08746,0.002423750000000016,4.979843883003111,,Average ,1305.4213625,1.8849187499999998,CCC_E05.xlsx,CCC_E05.xlsx
1202.775775,0.7607475,0.42558526648655565,0.002221249999999994,0.17234999999999998,3.73456492133237,0.25026625,0.25511875,0.12087875,0.19334250000000003,0.37114500000000006,14.8,1.0246487499999999,0.001700000000000007,4.834719557394036,,Average ,1285.1040874999999,1.7870962499999998,CCC_E06.xlsx,CCC_E06.xlsx
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