-
Notifications
You must be signed in to change notification settings - Fork 3
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Closes #23: ADVS template program #35
Conversation
Think it should be ready for review now. Feel free to review @pharmaverse/admiralmetabolic . I've used a somewhat different layout/setup compared to the other admiral packages. For me it makes more sense, but please let me know if it appears strange. |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Thanks @AndersAskeland!
I did a quick review and left some initial comments - I haven't tired executing the template yet.
In general, I am wondering if we would benefit from building on the existing ADVS template from {admiral} (rather than starting afresh like here) and just adding our extra bits? It would make review easier as well. interested in your thoughts.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Hi @AndersAskeland , I have posted some comments. Well done!
@pharmaverse/admiralmetabolic If anyone have time, please have a review of the template. |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
@AndersAskeland I added some comments. I also wonder if we should not build on existing ADVS templates from {admiral}. If not now, then for future templates.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
LGTM @AndersAskeland 😄 (after comments from @starosto are addressd)
Thanks for all the comments and suggestions. Most are now implemented - if you want, have a quick look. It would be great to have it merged before our meeting tomorrow. |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
I don't see a commit changing AVISIT
from Screening
to Baseline
for HEIGHT
as discussed here. Otherwise, LGTM! Thanks for working on that!
Co-authored-by: Andrii Yurovskyi <[email protected]>
@kathrinflunkert @Siddhesh2097 @starosto I will be merging in a few hours. If you have any final notes, please share now, otherwise please approve! |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
I had no time to follow all the discussions in every detail, but I also could not see anything I don't agree with. ;)
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
@AndersAskeland besides the comment on the ABLFL, I have no further thoughts. Thanks for a great job 💯
Closes #23
Thank you for your Pull Request! We have developed this task checklist from the Development Process Guide to help with the final steps of the process. Completing the below tasks helps to ensure our reviewers can maximize their time on your code as well as making sure the admiral family codebase remains robust and consistent.
Please check off each taskbox as an acknowledgment that you completed the task or check off that it is not relevant to your Pull Request. This checklist is part of the Github Action workflows and the Pull Request will not be merged into the
main
branch until you have checked off each task.styler::style_file()
to style R and Rmd filesdevtools::document()
so all.Rd
files in theman
folder and theNAMESPACE
file in the project root are updated appropriatelyNEWS.md
under the header# admiral<ext> (development version)
if the changes pertain to a user-facing function (i.e. it has an@export
tag) or documentation aimed at users (rather than developers)pkgdown::build_site()
and check that all affected examples are displayed correctly and that all new functions occur on the Reference page.lintr::lint_package()
R CMD check
locally and address all errors and warnings -devtools::check()