Popular repositories Loading

1. mob-suite mob-suite Public

   MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

   Python 125 33

2. staramr staramr Public

   Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

   Python 120 26

3. ecoli_serotyping ecoli_serotyping Public

   In silico prediction of E. coli serotype

   Python 49 11

4. irida irida Public

   Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

   Java 40 31

5. refseq_masher refseq_masher Public

   Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database

   Jupyter Notebook 40 4

6. biohansel biohansel Public

   Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes

   Python 26 7