Skip to content

Commit 17898de

Browse files
committed
Initial migration
1 parent bd23c1b commit 17898de

172 files changed

Lines changed: 11176 additions & 10457 deletions

File tree

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

index.json

Lines changed: 543 additions & 0 deletions
Large diffs are not rendered by default.

schemes/artic/400/v1.0.0/README.md

Lines changed: 61 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,61 @@
1+
# artic 400bp v1.0.0
2+
3+
[![Generic badge](https://img.shields.io/badge/STATUS-DEPRECATED-red.svg)]
4+
5+
> If you use this scheme please cite: https://doi.org/10.1101%2F2020.09.04.283077
6+
7+
[primalscheme labs](https://labs.primalscheme.com/detail/artic/400/v1.0.0)
8+
9+
## Metadata
10+
11+
**Target Organisms:**
12+
- sars-cov-2
13+
14+
## Contributors
15+
16+
- ARTIC network
17+
18+
## Overviews
19+
20+
<div style="width: 100%;"><img src="work/primer.svg" style="width: 100%;" alt="Click to see the source"></div>
21+
22+
## Details
23+
24+
```json
25+
{
26+
"schema_version": "1.0.0-alpha",
27+
"name": "artic",
28+
"amplicon_size": 400,
29+
"version": "v1.0.0",
30+
"contributors": [
31+
{
32+
"name": "ARTIC network"
33+
}
34+
],
35+
"target_organisms": [
36+
{
37+
"common_name": "sars-cov-2"
38+
}
39+
],
40+
"aliases": [
41+
"ARTIC/V1"
42+
],
43+
"license": "CC-BY-SA-4.0",
44+
"status": "DEPRECATED",
45+
"citations": [
46+
"https://doi.org/10.1101%2F2020.09.04.283077"
47+
],
48+
"primer_checksum": "primaschema:bed:3aa63ea0f7621a9b",
49+
"primer_file_sha256": "sha256:6f3e3899745e87087184550effda4d958d258c31d12d2832f6050c9dbb13271a",
50+
"reference_checksum": "primaschema:ref:21c16fc69acb3b9e",
51+
"reference_file_sha256": "sha256:b09a4a3d6824dc4a9f3a17d480f3335f73cb1507897f6dad0de871e8f00d8637"
52+
}
53+
```
54+
55+
56+
57+
------------------------------------------------------------------------
58+
59+
This work is licensed under a [Creative Commons Attribution-ShareAlike 4.0 International License](http://creativecommons.org/licenses/by-sa/4.0/)
60+
61+
![](https://i.creativecommons.org/l/by-sa/4.0/88x31.png)

schemes/artic/400/v1.0.0/info.json

Lines changed: 28 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,28 @@
1+
{
2+
"schema_version": "1.0.0-alpha",
3+
"name": "artic",
4+
"amplicon_size": 400,
5+
"version": "v1.0.0",
6+
"contributors": [
7+
{
8+
"name": "ARTIC network"
9+
}
10+
],
11+
"target_organisms": [
12+
{
13+
"common_name": "sars-cov-2"
14+
}
15+
],
16+
"aliases": [
17+
"ARTIC/V1"
18+
],
19+
"license": "CC-BY-SA-4.0",
20+
"status": "DEPRECATED",
21+
"citations": [
22+
"https://doi.org/10.1101%2F2020.09.04.283077"
23+
],
24+
"primer_checksum": "primaschema:bed:3aa63ea0f7621a9b",
25+
"primer_file_sha256": "sha256:6f3e3899745e87087184550effda4d958d258c31d12d2832f6050c9dbb13271a",
26+
"reference_checksum": "primaschema:ref:21c16fc69acb3b9e",
27+
"reference_file_sha256": "sha256:b09a4a3d6824dc4a9f3a17d480f3335f73cb1507897f6dad0de871e8f00d8637"
28+
}
File renamed without changes.

schemes/artic/400/v1.0.0/reference.fasta

Lines changed: 500 additions & 0 deletions
Large diffs are not rendered by default.

schemes/artic/400/v1.0.0/work/primer.svg

Lines changed: 1 addition & 0 deletions
Loading

schemes/artic/400/v2.0.0/README.md

Lines changed: 64 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,64 @@
1+
# artic 400bp v2.0.0
2+
3+
[![Generic badge](https://img.shields.io/badge/STATUS-DEPRECATED-red.svg)]
4+
5+
> If you use this scheme please cite: https://doi.org/10.1101%2F2020.09.04.283077
6+
7+
[primalscheme labs](https://labs.primalscheme.com/detail/artic/400/v2.0.0)
8+
9+
## Metadata
10+
11+
**Target Organisms:**
12+
- sars-cov-2
13+
14+
**Derived from:** sars-cov-2/artic/400/v1.0.0
15+
16+
## Contributors
17+
18+
- ARTIC network
19+
20+
## Overviews
21+
22+
<div style="width: 100%;"><img src="work/primer.svg" style="width: 100%;" alt="Click to see the source"></div>
23+
24+
## Details
25+
26+
```json
27+
{
28+
"schema_version": "1.0.0-alpha",
29+
"name": "artic",
30+
"amplicon_size": 400,
31+
"version": "v2.0.0",
32+
"contributors": [
33+
{
34+
"name": "ARTIC network"
35+
}
36+
],
37+
"target_organisms": [
38+
{
39+
"common_name": "sars-cov-2"
40+
}
41+
],
42+
"aliases": [
43+
"ARTIC/V2"
44+
],
45+
"license": "CC-BY-SA-4.0",
46+
"status": "DEPRECATED",
47+
"derived_from": "sars-cov-2/artic/400/v1.0.0",
48+
"citations": [
49+
"https://doi.org/10.1101%2F2020.09.04.283077"
50+
],
51+
"primer_checksum": "primaschema:bed:76a07be91780d545",
52+
"primer_file_sha256": "sha256:ebbdfb9b21607c24e4bcad65a8fe86f9dee7b5c4f4e308f3d5e45eed925b7f32",
53+
"reference_checksum": "primaschema:ref:21c16fc69acb3b9e",
54+
"reference_file_sha256": "sha256:b09a4a3d6824dc4a9f3a17d480f3335f73cb1507897f6dad0de871e8f00d8637"
55+
}
56+
```
57+
58+
59+
60+
------------------------------------------------------------------------
61+
62+
This work is licensed under a [Creative Commons Attribution-ShareAlike 4.0 International License](http://creativecommons.org/licenses/by-sa/4.0/)
63+
64+
![](https://i.creativecommons.org/l/by-sa/4.0/88x31.png)

schemes/artic/400/v2.0.0/info.json

Lines changed: 29 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,29 @@
1+
{
2+
"schema_version": "1.0.0-alpha",
3+
"name": "artic",
4+
"amplicon_size": 400,
5+
"version": "v2.0.0",
6+
"contributors": [
7+
{
8+
"name": "ARTIC network"
9+
}
10+
],
11+
"target_organisms": [
12+
{
13+
"common_name": "sars-cov-2"
14+
}
15+
],
16+
"aliases": [
17+
"ARTIC/V2"
18+
],
19+
"license": "CC-BY-SA-4.0",
20+
"status": "DEPRECATED",
21+
"derived_from": "sars-cov-2/artic/400/v1.0.0",
22+
"citations": [
23+
"https://doi.org/10.1101%2F2020.09.04.283077"
24+
],
25+
"primer_checksum": "primaschema:bed:76a07be91780d545",
26+
"primer_file_sha256": "sha256:ebbdfb9b21607c24e4bcad65a8fe86f9dee7b5c4f4e308f3d5e45eed925b7f32",
27+
"reference_checksum": "primaschema:ref:21c16fc69acb3b9e",
28+
"reference_file_sha256": "sha256:b09a4a3d6824dc4a9f3a17d480f3335f73cb1507897f6dad0de871e8f00d8637"
29+
}
File renamed without changes.

0 commit comments

Comments
 (0)