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Add isotropic thermal conduction and RKL2 supertimestepping #1

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merged 50 commits into from
Aug 21, 2024
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pgrete
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@pgrete pgrete commented Oct 19, 2022

New features

  • Added support for isotropic thermal conduction
  • Separated configuration of "isotropic/anisotropic" flux with "constant/Spitzer" coefficient
  • Support for second-order, RKL-based operator split diffusive terms (in addition to unsplit fluxes)

Open items

  • Add more doc

@BenWibking
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It looks like this also adds a new reconstruction method. Would it make sense to split that off into its own PR? or is that needed for the test problems here?

@pgrete
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pgrete commented Nov 21, 2022

That recon is already in main. I need to rebase this branch.

@pgrete pgrete changed the title WIP: Add isotropic thermal conduction and RKL2 supertimestepping Add isotropic thermal conduction and RKL2 supertimestepping Sep 25, 2023
@pgrete
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pgrete commented Sep 25, 2023

@forrestglines @BenWibking I just fixed the tests and updated to latest main.
In other words, this is ready for review ;)

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I've reviewed this as best I can, didn't find any obvious errors. If convergence looks good enough compared to literature, I think this is fine to merge

pkg->AddParam<>("thermal_diff", thermal_diff);

const auto mu = pkg->Param<Real>("mu");
conduction_sat_prefac = 6.86 * std::sqrt(mu) * conduction_sat_phi;
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Is this 6.86 a magic number?

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Yes, it assumes a fully ionized hydrogen plasma. I added an appropriate comment to clarify.

Comment on lines +221 to +227
if (parthenon::Globals::my_rank == 0) {
const auto ratio = 2.0 * tau / mindt_diff;
std::cout << "STS ratio: " << ratio << " Taking " << s_rkl << " steps." << std::endl;
if (ratio > 400.1) {
std::cout << "WARNING: ratio is > 400. Proceed at own risk." << std::endl;
}
}
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Do we always want to output this? Writing to STDOUT every cycle? Could this cause a slow down on some machines?

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I found this useful when running simulations (as it explains/is related to the performance per cycle).
Given that std:cout is buffered I also don't expect any significant slowdown.

src/hydro/hydro_driver.cpp Outdated Show resolved Hide resolved
return TaskStatus::complete;
}

// Assumes that prim and cons are in sync initially.
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Is this assumption affected by other user/pgen source terms that might be added?

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Currently not as it's both the very first task called before any other sources and the very last task called after FillDerived.
I added notes that if the position of the tasks changes, this should be updated.

@@ -2,5 +2,5 @@

Executes 2D ring diffusion problem following Sharma & Hammett (2007) and calculates convergence rate.
Errors are calculated based on comparison to steady state solution.
Convergence for this problem is not great, but matches other numbers reported in literate, e.g., Balsara, Tilley & Howk MNRAS (2008) doi:10.1111/j.1365-2966.2008.13085.x .
Convergence for this problem is not great, but matches other numbers reported in literature, e.g., Balsara, Tilley & Howk MNRAS (2008) doi:10.1111/j.1365-2966.2008.13085.x .
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Do you have an image of the problem to share? Any obvious issues with AthenaPK's solution?

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The resulting image from that test can directly be compared to the number in literature ( I extracted the numbers), i.e.
ring_convergence

@pgrete pgrete enabled auto-merge (squash) August 21, 2024 14:28
@pgrete pgrete merged commit 3daf5c9 into main Aug 21, 2024
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3 participants