Code

NWB Loader#10

Code

Merged

sneakers-the-rat merged 22 commits intomainp2p-ld/nwb-linkml:mainfrom nwb-loaderp2p-ld/nwb-linkml:nwb-loaderCopy head branch name to clipboardSep 12, 2024

+11,758-3,449

Commits

Commits on Aug 30, 2024

• testing nwb file, and experimenting with yaml format

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Commits on Aug 31, 2024

• working on grpah loading of nwb files

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Commits on Sep 2, 2024

• split up fixtures and nwb fixture in particular, add --clean pytest option

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• lint

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• codespell

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Commits on Sep 3, 2024

• update models to correctly handle ElementIdentifiers

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• exclude metadata vars from column and category checks

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• instantiate ValidationError according to pydantic/pydantic#6734

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• model update

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• checkpointing working on model loading. it's a sloggggggggg

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Commits on Sep 4, 2024

• CHECKPOINT WITH IT WORKING before cleanup and model regeneration

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• updating model generation methods, still some models being converted to str instead of being inlined, but almost there

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Commits on Sep 11, 2024

• Updating model generation methods to make both loader tests and hdmf include unit tests pass (pending following model update commit)

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• regenerate models

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• use in-repo version of models

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• bump nwb-models version

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• bump version of dependant nwb-models

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Commits on Sep 12, 2024

• clean up old hdf5 reader methods, fix truncate_hdf5 method, make proper'd test data files with working references

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• remove unused code, nocover some debug arms

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• working thru tests for nwb file

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• add id to index name on aligneddynamictable correctly

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• lint

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