Repositories list

• knowledgebase

  Public
  recipes, SOPs, notes on best practices

  R

  •0•2•2•0•Updated Jan 6, 2025Jan 6, 2025

• scRNAseq_template

  Public template
  Template for ENPRC Genomics Core single cell RNAseq projects

  R

  •0•1•7•1•Updated Nov 25, 2024Nov 25, 2024

• SMaSH_nextflow

  Public
  Python

  •0•0•4•0•Updated Aug 20, 2024Aug 20, 2024

• bulk_template

  Public template
  Template for ENPRC Genomics Core bulk RNAseq projects

  R

  •0•1•3•0•Updated Aug 13, 2024Aug 13, 2024

• gencoreBulk

  Public
  An R package to facilitate bulk RNAseq analyses at the ENPRC Genomics Core

  R

  •

  Other

  •0•1•3•1•Updated Jun 28, 2024Jun 28, 2024

• p23259_Gerardo_Analysis

  Public
  R

  •0•0•0•0•Updated Jun 25, 2024Jun 25, 2024

• gencoreSC

  Public
  An R package to facilitate single cell RNAseq analyses at the ENPRC Genomics Core

  R

  •

  Other

  •0•1•8•0•Updated May 14, 2024May 14, 2024

• cell_annotations

  Public
  Markers for cell type annotations of rhesus macaques

  MIT License

  •0•0•0•0•Updated May 2, 2024May 2, 2024

• scRNAseqWorkshop2023

  Public
  Code repo for 2023 CFAR Single cell analysis workshop

  HTML

  •1•0•2•0•Updated Nov 13, 2023Nov 13, 2023

• extractions_nextflow

  Public
  Nextflow

  •0•0•0•0•Updated Aug 4, 2023Aug 4, 2023

• bcl2fastq_nextflow

  Public
  Groovy

  •

  MIT License

  •0•0•0•0•Updated Jul 19, 2023Jul 19, 2023

• generate_cellranger_multi_run

  Public
  helper script to generate files for many-sample cellranger multi runs

  Python

  •0•0•1•0•Updated Jul 19, 2023Jul 19, 2023

• p22162_manuscript

  Public
  R

  •0•0•0•0•Updated Jun 23, 2023Jun 23, 2023

• artic-ncov2019

  Public
  ARTIC nanopore protocol for nCoV2019 novel coronavirus

  Python

  •

  Creative Commons Attribution 4.0 International

  •165•0•0•0•Updated Jan 7, 2022Jan 7, 2022

• openjdk-gkt

  Public
  dockerized tools

  Dockerfile

  •0•0•0•0•Updated May 7, 2020May 7, 2020