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    32 repositories

    • dcm2niix

      Public
      dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
      researchjpegneurosciencemrineuroimagingmri-imagesdicom-imagesjpeg-imagedcmnii
      C++
      •
      Other
      •228•933•4•0•Updated Mar 2, 2025Mar 2, 2025

    • minc-loader

      Public
      minc loader plugin for NiiVue
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Mar 2, 2025Mar 2, 2025

    • trx-javascript

      Public
      JavaScript reader and benchmark for tractography streamline formats
      TypeScript
      •3•0•0•0•Updated Feb 16, 2025Feb 16, 2025

    • glb-loader

      Public
      GLTF glb loader plugin for NiiVue
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •1•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • draco-loader

      Public
      Draco loader plugin for NiiVue
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • vox-loader

      Public
      MagicaVoxel loader plugin for NiiVue
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Feb 10, 2025Feb 10, 2025

    • ds-loader

      Public
      3ds loader plugin for NiiVue
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Feb 10, 2025Feb 10, 2025

    • tiff-loader

      Public
      TIFF loader plugin for NiiVue
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Feb 9, 2025Feb 9, 2025

    • niivue

      Public
      a WebGL2 based medical image viewer. Supports over 30 formats of volumes and meshes.
      TypeScript
      •
      BSD 2-Clause "Simplified" License
      •71•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • niimath

      Public
      niimath - a clone of fslmaths. Try the live demo:
      C
      •
      Other
      •16•59•3•0•Updated Dec 28, 2024Dec 28, 2024

    • MRIcroGL

      Public
      v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.
      visualizationglslvolume-renderingbids-formatdicom-viewerlazarusopengldicomniftimricrogl
      Python
      •
      Other
      •33•214•2•1•Updated Dec 4, 2024Dec 4, 2024

    • niivue-niimath

      Public
      Example code demonstrating integrating niivue, niimath using a Web Worker
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •2•0•0•0•Updated Jul 28, 2024Jul 28, 2024

    • brainchop

      Public
      Brainchop: In-browser 3D MRI rendering and segmentation
      JavaScript
      •
      MIT License
      •47•0•0•0•Updated Jun 12, 2024Jun 12, 2024

    • niimath_tests

      Public
      Validation tests for niimath https://github.com/rordenlab/niimath
      Shell
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Feb 3, 2024Feb 3, 2024

    • AphasiaResearchCohortQuery

      Public
      Obsolete repository, visit the AphasiaRecoveryCohortDemo
      MATLAB
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Dec 20, 2023Dec 20, 2023

    • NIFTI-Reader-JS

      Public
      A JavaScript NIfTI file format reader.
      JavaScript
      •
      MIT License
      •31•0•0•0•Updated Apr 15, 2023Apr 15, 2023

    • MRIcroWeb

      Public
      NIfTI volume rendering using WebGL
      nifti-formatwebgl2volume-renderervolume-ray-casting
      JavaScript
      •
      MIT License
      •10•40•0•0•Updated Dec 28, 2022Dec 28, 2022

    • nii2meshWeb

      Public
      Online NIfTI voxels to triangulated mesh conversion
      objmrimedical-imagingmesh-generationmarching-cubesnifti-format3dmesh-simplification
      C
      •
      Other
      •3•17•0•0•Updated Dec 5, 2022Dec 5, 2022

    • i2nii

      Public
      Convert various image formats to NIfTI.
      Pascal
      •
      BSD 2-Clause "Simplified" License
      •3•13•0•0•Updated Jul 30, 2022Jul 30, 2022

    • MeshFormatsJS

      Public
      JavaScript testing for popular neuroimaging mesh formats
      C
      •
      BSD 2-Clause "Simplified" License
      •2•0•0•0•Updated Apr 25, 2022Apr 25, 2022

    • nii2mesh

      Public
      Convert NIfTI volume to triangulated mesh using marching cubes
      C
      •
      Other
      •19•2•0•0•Updated Apr 19, 2022Apr 19, 2022

    • niivue-1

      Public
      a WebGL2 based NIFTI volume viewer
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •71•1•0•0•Updated Mar 4, 2022Mar 4, 2022

    • Fast-Quadric-Mesh-Simplification

      Public
      WASM version of Fast Quadric Mesh Simplification
      C++
      •
      MIT License
      •243•0•0•0•Updated Feb 14, 2022Feb 14, 2022

    • NIfTIrgb

      Public
      examples of NIfTI DT_RGB24 (red, green and blue) triplet storage relative to Analyze-style planar storage.
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jul 8, 2021Jul 8, 2021

    • NIfTIspace

      Public
      A single NIfTI image saved with all 48 spatial rotation permutations
      BSD 2-Clause "Simplified" License
      •0•28•1•0•Updated Jul 7, 2021Jul 7, 2021

    • afni

      Public
      Official AFNI source and documentation
      C
      •108•0•0•0•Updated Dec 18, 2020Dec 18, 2020

    • zlib

      Public
      Cloudflare fork of zlib with massive performance improvements
      C
      •2.5k•0•0•0•Updated Nov 18, 2020Nov 18, 2020

    • spmScripts

      Public
      Handy scripts for SPM
      MATLAB
      •27•73•0•0•Updated Sep 24, 2020Sep 24, 2020

    • TractographyFormat

      Public
      Experiments related to [new formats](https://github.com/nipy/nibabel/issues/942)
      MATLAB
      •0•1•0•0•Updated Aug 11, 2020Aug 11, 2020

    • zlib-ng

      Public
      zlib replacement with optimizations for "next generation" systems.
      C
      •
      zlib License
      •273•0•0•0•Updated Jan 25, 2020Jan 25, 2020