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@rabix Rabix

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    20 repositories

    • sbpack

      Public
      Command line utility to pack and upload/download CWL to/from SB powered platform
      Python
      •
      Apache License 2.0
      •5•8•5•6•Updated Dec 20, 2024Dec 20, 2024

    • wrabbit

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • cwl-svg

      Public
      A library for generating an interactive SVG visualization of CWL workflows
      visualizationsvgworkflowbioinformaticscwl
      TypeScript
      •
      Apache License 2.0
      •17•77•10•12•Updated Aug 15, 2024Aug 15, 2024

    • cwl-format

      Public
      A very opinionated code formatter for CWL
      common-workflow-languagecwlcode-formatter
      Common Workflow Language
      •
      Apache License 2.0
      •4•9•6•0•Updated Dec 7, 2023Dec 7, 2023

    • benten

      Public
      A language server for Common Workflow Language
      editorideworkflowlanguage-servercommon-workflow-languagecwlcwl-documents
      Python
      •
      Apache License 2.0
      •10•67•31•3•Updated Dec 6, 2023Dec 6, 2023

    • fhir2metabridge

      Public
      Quick FHIR import data from INCLUDE FHIR Server to set metadata of interest
      Jupyter Notebook
      •2•0•0•0•Updated Aug 11, 2023Aug 11, 2023

    • cwl-ts

      Public
      Typescript data model for Common Workflow Language
      workflowtypescriptcommon-workflow-languagecwl
      TypeScript
      •
      Apache License 2.0
      •19•48•5•12•Updated Mar 3, 2023Mar 3, 2023

    • composer

      Public
      Visual and code editor for Common Workflow Language
      editoridecommon-workflow-languagecwl
      TypeScript
      •
      Apache License 2.0
      •72•301•46•41•Updated Jan 11, 2023Jan 11, 2023

    • sb-ci

      Public
      Facilitating a local -> Seven Bridges platform development model. Using pre-commit hooks to test CWL with cwltool, and Github Actions + sbpack to deploy workflows to an SB platform.
      Common Workflow Language
      •
      Apache License 2.0
      •3•2•0•0•Updated Oct 6, 2021Oct 6, 2021

    • rabix.github.io

      Public
      Source code for rabix.io
      HTML
      •0•0•1•0•Updated Jul 16, 2021Jul 16, 2021

    • bunny

      Public
      [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
      executorcommon-workflow-languagecommonwljavadockerworkflowcwl
      Common Workflow Language
      •
      Apache License 2.0
      •28•74•72•0•Updated Nov 18, 2020Nov 18, 2020

    • sb-run

      Public
      Command line tool to upload CWL from local disk to a SB powered platform and run it there
      Python
      •0•0•0•0•Updated Sep 20, 2019Sep 20, 2019

    • cliche

      Public archive
      [Historical] An ancestor of Rabix Composer
      JavaScript
      •
      MIT License
      •1•3•0•0•Updated Apr 21, 2019Apr 21, 2019

    • rabix

      Public archive
      [Historical] Reproducible Analyses for Bioinformatics
      Python
      •
      GNU Affero General Public License v3.0
      •26•106•23•0•Updated Mar 11, 2019Mar 11, 2019

    • custom-executor

      Public
      Custom executors for Rabix Composer
      Java
      •
      Apache License 2.0
      •1•2•0•0•Updated Feb 23, 2019Feb 23, 2019

    • cottontail

      Public archive
      [Historical] Ancestor to Rabix Composer
      JavaScript
      •
      Apache License 2.0
      •5•8•20•0•Updated Jun 2, 2017Jun 2, 2017

    • cottontail-editors

      Public archive
      [Historical] An ancestor of Rabix Composer
      JavaScript
      •
      Apache License 2.0
      •3•3•1•0•Updated Dec 12, 2016Dec 12, 2016

    • registry

      Public archive
      [Historical] An early prototype for some rabix tools
      JavaScript
      •
      GNU Affero General Public License v3.0
      •1•5•0•0•Updated Nov 3, 2015Nov 3, 2015

    • rabix-cliche

      Public archive
      [Historical] Rabix tool command line generator
      JavaScript
      •
      GNU Affero General Public License v3.0
      •1•0•0•0•Updated May 18, 2015May 18, 2015

    • experiments

      Public archive
      [Historical] Precursor experiments that led to Rabix Composer/Executor and CWL
      Python
      •1•1•0•0•Updated Oct 10, 2014Oct 10, 2014