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    64 repositories

    • k-doering-utilities

      Public
      Utility scripts and functions
      R
      •
      MIT License
      •0•1•0•0•Updated Mar 15, 2025Mar 15, 2025

    • asar

      Public
      Partially automate a U.S. stock assessment report.
      latexquartostock-assessment-reports
      R
      •
      MIT License
      •3•21•10•3•Updated Mar 14, 2025Mar 14, 2025

    • ss3-source-code

      Public
      The source code for Stock Synthesis (SS3).
      fisheriesstockassessmentstock-synthesis
      C++
      •
      Creative Commons Zero v1.0 Universal
      •17•38•110•1•Updated Mar 14, 2025Mar 14, 2025

    • stockplotr

      Public
      R package that contains general tables and figures such as standard objects in an assessment report, and other important visualizations to interpret results of stock assessment models.
      R
      •
      Other
      •3•3•11•3•Updated Mar 14, 2025Mar 14, 2025

    • test-gha

      Public
      0•0•0•0•Updated Mar 13, 2025Mar 13, 2025

    • .github

      Public
      templatesggt
      0•0•1•2•Updated Mar 13, 2025Mar 13, 2025

    • ss3-doc

      Public
      Source code for the Stock Synthesis manual and other documentation
      latexstock-synthesis
      TeX
      •
      Creative Commons Zero v1.0 Universal
      •2•3•15•0•Updated Mar 12, 2025Mar 12, 2025

    • Optics-SI-Main

      Public
      This repo is main landing page for the Optics Strategic Initiative. Includes vision statements and proposals, project planning and management, and ties to individual repositories for the purpose of advancing automated image analysis for NOAA Fisheries.
      Other
      •1•0•6•1•Updated Mar 12, 2025Mar 12, 2025

    • PAM_National_Network

      Public
      National coordination page for the seven NOAA Fisheries Passive Acoustic Monitoring Programs
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •0•2•8•0•Updated Mar 12, 2025Mar 12, 2025

    • PAM-Glider

      Public
      Summary of NOAA Fisheries PAM equipped Glider Research.
      Lua
      •
      Creative Commons Zero v1.0 Universal
      •0•1•1•0•Updated Mar 12, 2025Mar 12, 2025

    • PAM-acodet-batchScale

      Public
      automatic detection of vocalizing animals in acoustic datasets
      Python
      •
      MIT License
      •2•0•0•2•Updated Mar 11, 2025Mar 11, 2025

    • journals

      Public
      Bibliography files for journals of interest to fisheries
      TeX
      •
      GNU General Public License v3.0
      •0•13•5•0•Updated Mar 11, 2025Mar 11, 2025

    • quarto-accessibility-reprex

      Public
      A simple, reproducible example of added features from the default quarto template to make a pdf document more accessible.
      TeX
      •
      MIT License
      •0•0•1•0•Updated Mar 10, 2025Mar 10, 2025

    • FIT-status

      Public
      nmfs-fish-tools status dashboard based on https://github.com/espinielli/status
      dashboardproject-managementnoaa-fit
      R
      •0•2•1•0•Updated Mar 10, 2025Mar 10, 2025

    • DisMAP

      Public
      The Distribution Mapping and Analysis Portal is a national web application which displays spatial distribution data for over 400 marine fish and macroinvertebrates
      Python
      •1•2•0•0•Updated Mar 7, 2025Mar 7, 2025

    • FIT-resource-blog

      Public
      Source code for the FIT software development resources
      noaa-fit
      CSS
      •
      The Unlicense
      •8•0•0•1•Updated Mar 6, 2025Mar 6, 2025

    • nmfspalette

      Public
      🎨 an R color palette for NOAA Fisheries official colors
      R
      •
      Other
      •9•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • AA-SI_aalibrary

      Public
      A python library used for fetching acoustics data.
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • SSMSE

      Public
      Management Strategy Evaluation (MSE) using Stock Synthesis (SS3)
      R
      •
      MIT License
      •12•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • PAM-minke-whale-detector_batch-processing_linux

      Public
      Minke detector running in batch mode (with processing queue) in a linux environment. Developer: Xavier Mouy
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • Havron-MixedResidualStudy

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 1, 2025Mar 1, 2025

    • PAM-OpenScience

      Public
      Instructions and Templates for working with Open Science
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •1•1•8•0•Updated Feb 28, 2025Feb 28, 2025

    • ss3-user-examples

      Public
      Stock synthesis example models for users
      fisheriesstock-synthesis
      Scheme
      •
      Creative Commons Zero v1.0 Universal
      •5•1•8•0•Updated Feb 24, 2025Feb 24, 2025

    • ghactions4r

      Public
      Reusable github actions workflows for R packages
      R
      •2•0•0•0•Updated Feb 21, 2025Feb 21, 2025

    • PAM-glider-CalCurCEAS

      Public
      glider piloting and analysis overlapping with CalCurCEAS 2024
      MATLAB
      •
      MIT License
      •1•2•0•0•Updated Feb 19, 2025Feb 19, 2025

    • PAM-Soundscapes

      Public
      Summary of NOAA Fisheries PAM-SI Soundscapes Research
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Feb 19, 2025Feb 19, 2025

    • Genomics_Resources

      Public
      Nextflow
      •
      Other
      •0•3•0•0•Updated Feb 15, 2025Feb 15, 2025

    • PAM-GliderRodeo

      Public
      Repository associated with the NMFS PAM-Glider "Glider Rodeo", a collaborative in-water investigation into contemporary PAM-glider systems
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•1•15•0•Updated Feb 14, 2025Feb 14, 2025

    • PAM-Trends

      Public
      Summary of NOAA Fisheries PAM Trends Research
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •0•0•2•0•Updated Feb 13, 2025Feb 13, 2025

    • AA-SI_PublicPage

      Public
      Public-facing information about the Active Acoustics Strategic Initiative
      Lua
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025