Repositories list

• training-material

  Public
  Training material of DataPLANT workshops and classes

  HTML

  •

  Creative Commons Attribution 4.0 International

  •5•0•2•1•Updated Oct 14, 2025Oct 14, 2025

• Swate

  Public
  Excel Add-In for annotation of experimental data and computational workflows.

  educationbiologyontology+ 4isaresearch-data-managementrdmminimal-information

  F#

  •

  MIT License

  •9•44•34•6•Updated Oct 14, 2025Oct 14, 2025

• nfdi4plants.github.io

  Public
  DataPLANT website made with Astro 🚀

  Astro

  •

  MIT License

  •17•5•2•1•Updated Oct 14, 2025Oct 14, 2025

• BOAT-Builder-for-Ontology-Annotation-Tables

  Public
  This tool/website is for a user friendly creating of an Annotation table (essay or study) out of your free text protocols with self-annotated ontology labeled terms. These templates can be used in your ARC afterwards.

  F#

  •0•2•10•0•Updated Oct 14, 2025Oct 14, 2025

• nfdi4plants.knowledgebase

  Public
  This is the source repo for the nfdi4plants knowledge base webpage.

  slidestutorialsfaq+ 3how-toknowledge-baseguides

  MDX

  •

  Creative Commons Attribution 4.0 International

  •35•5•11•2•Updated Oct 10, 2025Oct 10, 2025

• helpdesk

  Public
  DataPLANT helpdesk as SPA website with server for creating MS Teams issues.

  fsharpfablesafe-stack

  F#

  •0•1•1•0•Updated Oct 10, 2025Oct 10, 2025

• ARCitect

  Public
  Cross-platform app to create and manage ARCs.

  Vue

  •7•13•62•2•Updated Oct 10, 2025Oct 10, 2025

• DataHUB

  Public
  This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.

  Shell

  •

  MIT License

  •4•6•24•0•Updated Oct 9, 2025Oct 9, 2025

• swate-template-registry

  Public
  A collection of templates for Swate (https://github.com/nfdi4plants/Swate).

  C#

  •

  MIT License

  •20•5•7•0•Updated Oct 9, 2025Oct 9, 2025

• ARCtrl

  Public
  Polyglot (.NET/JS/Python) library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

  fsharpisaarc+ 5cwlrdmfair-datafable-librariesro-crate

  F#

  •

  MIT License

  •9•18•39•1•Updated Oct 8, 2025Oct 8, 2025

• elab2arc

  Public
  A tool to convert electronic lab notebook experiments to Annotated Research Context (ARC) assays

  JavaScript

  •

  GNU General Public License v3.0

  •2•1•0•0•Updated Oct 8, 2025Oct 8, 2025

• arc-validate

  Public
  Libraries and CLI tools for creation, consumption, and execution of ARC validation packages

  dockerunit-testingvalidation+ 7expectofsharpdotnetarcnfdi4plantsdataplantisa-dotnet

  F#

  •

  MIT License

  •3•4•22•13•Updated Oct 6, 2025Oct 6, 2025

• arc-validation-packages

  Public
  ARC validation packages for https://avpr.nfdi4plants.org maintained by DataPLANT

  F#

  •

  MIT License

  •0•2•2•0•Updated Sep 30, 2025Sep 30, 2025

• arc-export

  Public
  Containerized CLI tool for exporting ARCs to other formats such as ISA-JSON or RO-Crate

  F#

  •

  MIT License

  •1•3•4•7•Updated Sep 30, 2025Sep 30, 2025

• git-binaries

  Public
  HTML

  •0•0•0•0•Updated Sep 30, 2025Sep 30, 2025

• arc-validate-package-registry

  Public
  A repository of validation packages for ARCs

  F#

  •

  MIT License

  •4•3•15•1•Updated Sep 29, 2025Sep 29, 2025

• ARCSummary

  Public
  Library to create or update markdown content of ARCs dynamically

  F#

  •3•2•15•0•Updated Sep 26, 2025Sep 26, 2025

• exceljs

  Public
  Excel Workbook Manager fork compatible with .NET OpenXML standard.

  JavaScript

  •

  MIT License

  •1.9k•1•0•0•Updated Sep 22, 2025Sep 22, 2025

• nfdi4plants_ontology

  Public
  An intermediate ontology for plants used by DataPLANT to fill the ontology gap

  ontologybrokernfdi4plants+ 2dataplantdbpo

  F#

  •

  Creative Commons Attribution 4.0 International

  •11•7•4•0•Updated Sep 20, 2025Sep 20, 2025

• ARCCommander

  Public
  CLI tool to manage your ARCs

  F#

  •

  MIT License

  •9•12•21•2•Updated Sep 19, 2025Sep 19, 2025

• arc-rdm.org

  Public
  The official ARC website!

  Astro

  •2•3•7•0•Updated Sep 17, 2025Sep 17, 2025

• metadataquiz

  Public
  HTML

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Sep 12, 2025Sep 12, 2025

• spreadsheet-fragment-identifiers

  Public
  lightweight fragment identifier spec for spreadsheet formats.

  fragmentsdataspreadsheet+ 1specification

  MIT License

  •0•0•0•0•Updated Sep 9, 2025Sep 9, 2025

• ARCtrl.Querymodel

  Public
  This library contains reader functions to interact with the different formats present in an ARC

  F#

  •

  MIT License

  •1•5•4•1•Updated Sep 8, 2025Sep 8, 2025

• arc-wr-ro-crate-profile

  Public
  F#

  •

  MIT License

  •0•0•13•0•Updated Sep 7, 2025Sep 7, 2025

• DataHUB-cluster

  Public
  The DataHUB cluster project is an Ansible library for deploying and managing a cloud-based Gitlab cluster.

  Jinja

  •

  MIT License

  •0•0•0•0•Updated Sep 5, 2025Sep 5, 2025

• arc-datamap-ro-crate-profile

  Public
  MIT License

  •0•0•4•0•Updated Sep 5, 2025Sep 5, 2025

• dataplan

  Public template
  DataPLAN is a Data Management Plan (DMP) generator developed by DataPLANT

  documentgeneration

  JavaScript

  •

  GNU General Public License v3.0

  •11•8•5•0•Updated Aug 26, 2025Aug 26, 2025

• archigator-backend

  Public
  Archigator, a publicaton tool from Gitlab to Invenio

  Python

  •

  GNU Affero General Public License v3.0

  •0•1•2•0•Updated Aug 25, 2025Aug 25, 2025

• invenio-previewer-ro-crate

  Public
  Invenio module for previewing files.

  Python

  •

  MIT License

  •62•0•0•0•Updated Aug 18, 2025Aug 18, 2025