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@mobidic Montpellier BioInformatique pour le Diagnostic Clinique

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    27 repositories

    • SEAL

      Public
      SEAL db - Simple, Efficient And Lite database for NGS
      flaskdata-sciencebioinformaticsdatabasengsdata-visualizationflask-applicationflask-sqlalchemybioinformatics-databasesngs-analysis
      HTML
      •
      GNU General Public License v3.0
      •1•9•29•0•Updated Oct 11, 2024Oct 11, 2024

    • MobiDL

      Public
      MobidicWDL workflows
      bioinformatics-pipelineworkflowvcfwdlworkflow-panelcapture
      WDL
      •
      GNU General Public License v3.0
      •3•5•0•0•Updated Oct 7, 2024Oct 7, 2024

    • generate_panel

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • MobiCNV

      Public
      CNV analysis based on the depth of coverage of Illumina data
      bioinformatics-toolvcf-filescoverage-filestsv-filesgene-panelscnv-analysis
      Python
      •
      GNU General Public License v3.0
      •1•8•0•0•Updated Sep 5, 2024Sep 5, 2024

    • Captain-ACHAB

      Public
      Analysis Converter for Human who might Abhor Bioinformatics. A simple and useful interface to analysis of WES data for molecular diagnosis
      Perl
      •
      MIT License
      •2•6•4•0•Updated Jun 21, 2024Jun 21, 2024

    • knotAnnotSV

      Public
      A simple script to create a customizable html file from an AnnotSV output.
      visualizationannotationrankingsv
      HTML
      •
      GNU General Public License v3.0
      •6•18•2•0•Updated May 3, 2024May 3, 2024

    • autoAchab

      Public
      script to automatically launch captainAchab MobiDL WDL workflow
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 14, 2023Sep 14, 2023

    • AddDB_updater

      Public
      Script to update external cross reference database into a single file
      Perl
      •0•0•0•0•Updated Apr 17, 2023Apr 17, 2023

    • ovirt_api_scripts

      Public
      python script to manage oVirt from the API
      Python
      •
      GNU General Public License v3.0
      •0•1•0•1•Updated Dec 8, 2022Dec 8, 2022

    • spliceai

      Public
      REST API for spliceai
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jun 22, 2022Jun 22, 2022

    • MPA

      Public
      MoBiDiC Priorization Algorithm
      Python
      •
      MIT License
      •2•10•5•0•Updated Jun 1, 2022Jun 1, 2022

    • update_annovar_db

      Public
      scripts to automatically update ANNOVAR db
      Python
      •
      GNU General Public License v3.0
      •4•16•0•0•Updated Nov 17, 2021Nov 17, 2021

    • Achabilarity

      Public
      Achab In Singularity, a Singularity Container for Captain Achab (annotation workflow)
      MIT License
      •0•0•0•0•Updated Apr 2, 2021Apr 2, 2021

    • nenufaar

      Public
      DNA NGS pipeline
      Shell
      •1•2•0•0•Updated Jan 27, 2021Jan 27, 2021

    • mobidicweb

      Public
      web site for mobidic group
      CSS
      •1•1•1•0•Updated Dec 4, 2019Dec 4, 2019

    • Variant-CallerWrapped

      Public
      Wrapper for Variant-Caller execution
      Python
      •0•1•0•0•Updated Jun 20, 2019Jun 20, 2019

    • Crom-wellWrapped

      Public
      Wrapper for Cromwell execution
      Shell
      •0•0•0•0•Updated Mar 26, 2019Mar 26, 2019

    • MDAPI

      Public
      RESTful API for MobiDetails - deprecated - see MDUtils repo
      Perl
      •0•0•0•0•Updated Dec 17, 2018Dec 17, 2018

    • MoLLuDiC

      Public
      CNV pipeline for MobiDL and Achab
      Shell
      •1•0•0•0•Updated Sep 24, 2018Sep 24, 2018

    • BARMEN

      Public
      BenchmARking from Mobidic for Exome sequencing at Nucleotide scale
      Shell
      •2•0•0•0•Updated Sep 13, 2018Sep 13, 2018

    • MobiBedAnnotator

      Public
      This script will annotate a BED file with refSeq NM and exons positions
      Shell
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Aug 13, 2018Aug 13, 2018

    • Dev-Singularity

      Public
      Repo for singularity development and test
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 7, 2018Jun 7, 2018

    • phenolyzer

      Public
      phenotype-based prioritization of candidate genes for human diseases
      Perl
      •33•0•1•0•Updated May 31, 2018May 31, 2018

    • MobiDL-dev

      Public
      Developement of new pipeline from MobiDL
      WDL
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 28, 2018May 28, 2018

    • mpaweb

      Public
      Website for MPA
      CSS
      •0•1•1•0•Updated May 12, 2018May 12, 2018

    • oneliners

      Public
      Useful bash one-liners for bioinformatics.
      519•0•0•0•Updated Apr 5, 2018Apr 5, 2018

    • nenufaarityweb

      Public
      HTML
      •0•1•0•0•Updated Dec 5, 2017Dec 5, 2017