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    107 repositories

    • flyem-snapshot

      Public
      Connectome exports and reports
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•25•1•Updated Mar 10, 2026Mar 10, 2026

    • neuclease

      Public
      Tools for computing interactive "cleaves" of agglomerated neuron fragments from a DVID server.
      Jupyter Notebook
      •
      Other
      •6•9•5•1•Updated Mar 10, 2026Mar 10, 2026

    • drosophila_neurotransmitters

      Public
      Neurotransmitter ground truth
      TeX
      •1•0•0•0•Updated Mar 9, 2026Mar 9, 2026

    • ngsidekick

      Public
      Tools for preparing and working with neuroglancer scenes
      Jupyter Notebook
      •
      Other
      •0•1•11•0•Updated Mar 2, 2026Mar 2, 2026

    • flyemflows

      Public
      Python
      •
      Other
      •2•3•2•1•Updated Feb 6, 2026Feb 6, 2026

    • dvid

      Public
      Distributed, Versioned, Image-oriented Dataservice
      gobig-datakey-value
      gobig-datakey-valueneuroscienceversioningimage-storageconnectomicshttp-servicedataservice
      Go
      •
      Other
      •32•201•70•0•Updated Jan 30, 2026Jan 30, 2026

    • male-cns

      Public
      Website for the MaleCNS Project Page and Dimorphism Explorer
      Python
      •
      GNU General Public License v3.0
      •0•0•1•2•Updated Jan 29, 2026Jan 29, 2026

    • bigclust

      Public
      Tools to visualize and annotate big clusterings
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jan 22, 2026Jan 22, 2026

    • flyem-shortener

      Public
      link shortener for neuroglancer
      Python
      •0•2•3•0•Updated Dec 3, 2025Dec 3, 2025

    • ngsidekick-server

      Public
      Http endpoints to supplement neuroglancer scenes
      Python
      •
      Other
      •0•0•0•0•Updated Nov 25, 2025Nov 25, 2025

    • echo-secure

      Public
      Go library that uses Google oAuth2 authentication and custom authorization for the echo framework.
      Go
      •2•3•0•2•Updated Nov 20, 2025Nov 20, 2025

    • NeuTu

      Public
      Software package for neuron reconstruction and visualization
      c-plus-plusqtsegmentation
      c-plus-plusqtsegmentationconnectome-reconstruction
      C++
      •
      Other
      •12•40•59•0•Updated May 27, 2025May 27, 2025

    • flyem-conda-recipes

      Public
      Conda recipes for building FlyEM's software stack
      Shell
      •16•0•0•0•Updated May 21, 2025May 21, 2025

    • lowtis

      Public
      Low Latency Image Service
      C++
      •
      Other
      •4•1•0•0•Updated May 21, 2025May 21, 2025

    • dvidutils

      Public
      A collection of utility functions for dealing with dvid data
      C++
      •2•0•0•1•Updated May 21, 2025May 21, 2025

    • libdvid-cpp

      Public
      C++ library for accessing DVID's REST API
      HTML
      •
      Other
      •7•6•21•1•Updated May 21, 2025May 21, 2025

    • tensorstore-dvid-api

      Public
      A Python-based FastAPI service that provides HTTP API support for selected DVID endpoints, using TensorStore as the backend data source.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • vol2mesh

      Public
      A mesh generating wrapper in Python 3
      Python
      •
      Other
      •7•7•2•1•Updated Feb 27, 2025Feb 27, 2025

    • dvid-console

      Public
      Web console and API help for DVID
      JavaScript
      •1•3•8•12•Updated Jun 7, 2024Jun 7, 2024

    • dvid-resource-manager

      Public
      Manages large-scale batch requests to DVID.
      Python
      •0•1•6•0•Updated May 27, 2024May 27, 2024

    • flyem-views

      Public
      A git repo to preserve the history of gs://flyem-views
      0•1•0•0•Updated Sep 21, 2023Sep 21, 2023

    • imgsearch_sig

      Public
      Fast image search functions using signatures.
      Python
      •0•0•0•0•Updated Jun 1, 2023Jun 1, 2023

    • appdata-store

      Public
      HTTP cloud function interface to the Google Datastore to manage application state.
      Python
      •0•0•0•2•Updated May 1, 2023May 1, 2023

    • dvid-io

      Public
      DVID documentation website
      JavaScript
      •0•0•0•40•Updated Mar 5, 2023Mar 5, 2023

    • neuPrint-Build-Update

      Public
      Collection of scripts to build and update the neuPrint neo4j database
      Python
      •0•0•0•0•Updated Jan 5, 2023Jan 5, 2023

    • ingestion-guide-aso-mb-4nm

      Public
      A guide to ingesting new volumes into DVID, using the Aso MB 4nm as an example.
      Python
      •0•1•0•0•Updated Oct 4, 2022Oct 4, 2022

    • flyem-recon-qc

      Public
      Quality control scripts used in EM reconstruction
      Python
      •0•0•0•0•Updated Sep 20, 2022Sep 20, 2022

    • flyem-build-container

      Public
      Docker container for building FlyEM conda packages
      Dockerfile
      •
      Other
      •56•0•0•0•Updated Sep 12, 2022Sep 12, 2022

    • dvidjs

      Public
      Javascript API to Access a DVID server
      JavaScript
      •
      Other
      •0•1•0•0•Updated Jul 26, 2022Jul 26, 2022

    • buildem

      Public archive
      CMake and other scripts to help build process of FlyEM software
      CMake
      •
      Other
      •16•27•5•1•Updated Jun 9, 2022Jun 9, 2022