Repositories list

• gen

  Public
  Rust

  •

  Apache License 2.0

  •0•10•0•12•Updated Feb 5, 2025Feb 5, 2025

• react-json-schema-form-builder

  Public
  Visual editor for forms based on json schema, built in React JS

  TypeScript

  •

  Apache License 2.0

  •84•334•24•4•Updated Feb 4, 2025Feb 4, 2025

• ginkgo-ai-client

  Public
  Python client for Ginkgo's AI model API

  aiprotein-designsequence-design+ 2mrna-stabilityllm

  Python

  •

  MIT License

  •3•8•0•0•Updated Jan 22, 2025Jan 22, 2025

• ginkgoai-protein-embedding-tutorial

  Public
  Tutorial on how to use Ginkgo AI embedding APIs for scientific problems

  Jupyter Notebook

  •

  MIT License

  •1•19•0•0•Updated Nov 22, 2024Nov 22, 2024

• edge

  Public
  Efficiently keep track of changes to genomes

  primerbioinformaticsgenome+ 5edgegenome-annotationprefix-treencbi-blastgff

  Python

  •

  MIT License

  •4•38•4•5•Updated Jul 22, 2024Jul 22, 2024

• geckopy

  Public
  Enzyme-constrained genome-scale models in python

  systems-biologythermodynamicsdata-integration+ 4proteomicskineticsomicsenzyme-constraints

  Python

  •

  Apache License 2.0

  •7•25•5•1•Updated Oct 25, 2023Oct 25, 2023

• fluoride

  Public
  Automating the creation of microservices in AWS!

  Python

  •

  MIT License

  •1•3•1•1•Updated Aug 22, 2022Aug 22, 2022

• shepard

  Public
  Automating the creation of batch processing workflows in AWS!

  Python

  •

  MIT License

  •7•48•1•2•Updated Apr 5, 2022Apr 5, 2022

• seqviz

  Public
  DNA sequence viewer supporting custom, GenBank, FASTA, NCBI accession, and iGEM input.

  TypeScript

  •

  MIT License

  •56•1•0•0•Updated Dec 23, 2021Dec 23, 2021

• vaccinetime

  Public
  A bot by @dpca from @ginkgobioworks, helping you find open vaccine appointments in Massachusetts

  Ruby

  •

  Apache License 2.0

  •7•72•1•1•Updated May 13, 2021May 13, 2021

• curious-js

  Public
  JavaScript consumer code for Curious APIs.

  xhrajaxquery-language+ 3curiousjavascriptpromise

  JavaScript

  •

  MIT License

  •5•4•1•0•Updated Apr 29, 2021Apr 29, 2021

• pymzML

  Public
  pymzML - an interface between Python and mzML Mass spectrometry Files

  Python

  •

  GNU Lesser General Public License v3.0

  •93•3•0•0•Updated Aug 16, 2020Aug 16, 2020

• sars-cov-2-synthesis

  Public
  Ginkgo SARS-CoV-2 synthesis efforts: overviews and data

  Shell

  •0•12•0•0•Updated Jun 7, 2020Jun 7, 2020

• ontology-clean

  Public
  Clean and organize metadata with ontologies

  Python

  •1•2•0•0•Updated Nov 23, 2019Nov 23, 2019

• pychemy

  Public
  Python helpers for handling chemical formulas.

  chemistrycheminformaticsmass-spectrometry+ 1formulas

  Python

  •

  MIT License

  •6•5•0•0•Updated Feb 14, 2019Feb 14, 2019

• pypiserver

  Public
  Minimal PyPI server for uploading & downloading packages with pip/easy_install

  Python

  •

  Other

  •304•0•0•0•Updated Jan 28, 2019Jan 28, 2019

• graphene-django-extras

  Public
  Extras functionalities for Graphene-Django

  Python

  •

  MIT License

  •108•0•0•1•Updated Jan 28, 2019Jan 28, 2019

• igv.js

  Public
  Embeddable genomic visualization component based on the Integrative Genomics Viewer

  JavaScript

  •

  MIT License

  •232•1•0•1•Updated Jan 18, 2019Jan 18, 2019

• docker-registry-client

  Public
  A Python REST client for the Docker Registry

  Python

  •

  Apache License 2.0

  •59•0•0•0•Updated Jan 16, 2019Jan 16, 2019

• grafana-logstream

  Public archive
  CSS

  •

  MIT License

  •0•2•0•0•Updated Jun 30, 2018Jun 30, 2018

• plotly-plot

  Public
  Polymer element for the plotly.js library

  polymerplotlyplotlyjs+ 3bowerplotpolymer-element

  JavaScript

  •1•21•1•0•Updated Apr 26, 2018Apr 26, 2018

• curious

  Public archive
  Graph-based data exploration tool

  querydjangosql+ 2graph-databasequery-language

  Python

  •

  MIT License

  •5•8•0•0•Updated Apr 6, 2018Apr 6, 2018

• celery

  Public
  Distributed Task Queue (development branch)

  Python

  •

  Other

  •4.7k•0•0•0•Updated Dec 11, 2017Dec 11, 2017

• xcms

  Public
  Ginkgo Bioworks' extensions and fixes to XCMS

  metabolomicsmass-spectrometryxcms+ 3lipidomicsgcmslcms

  R

  •

  Other

  •2•1•0•1•Updated Nov 15, 2017Nov 15, 2017

• giraffe-ui

  Public
  Javascript visualization of features on a sequence

  JavaScript

  •

  Other

  •1•0•0•0•Updated Sep 27, 2017Sep 27, 2017

• scatter-matrix

  Public
  Explore data matrix using scatterplot matrix

  JavaScript

  •

  MIT License

  •35•0•0•0•Updated Aug 23, 2017Aug 23, 2017

• calibrate

  Public
  Create and use linear- and power-regression based calibration curves

  linear-regressionregressioncalibration+ 3quantificationpower-regressioncalibration-curve

  Python

  •

  MIT License

  •4•0•0•0•Updated May 1, 2017May 1, 2017

• react-curious

  Public
  React data container for curious-js

  MIT License

  •0•0•0•0•Updated Feb 23, 2017Feb 23, 2017

• spserver

  Public
  Node static page server for quickly getting MVVM running

  JavaScript

  •

  Other

  •2•1•0•0•Updated Dec 24, 2016Dec 24, 2016

• regression-js

  Public
  A javascript library containing a collection of least squares fitting methods

  JavaScript

  •

  MIT License

  •131•1•0•0•Updated Dec 19, 2016Dec 19, 2016