Ginkgo Bioworks

All

36 repositories

gen
Public
Rust
•
Apache License 2.0
•0•9•0•7•Updated Dec 21, 2024Dec 21, 2024
ginkgo-ai-client
Public
Python client for Ginkgo's AI model API
ai protein-design sequence-design mrna-stability llm
Python
•
MIT License
•2•6•0•0•Updated Dec 17, 2024Dec 17, 2024
react-json-schema-form-builder
Public
Visual editor for forms based on json schema, built in React JS
TypeScript
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Apache License 2.0
•83•331•24•1•Updated Dec 12, 2024Dec 12, 2024
ginkgoai-protein-embedding-tutorial
Public
Tutorial on how to use Ginkgo AI embedding APIs for scientific problems
Jupyter Notebook
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MIT License
•1•19•0•0•Updated Nov 22, 2024Nov 22, 2024
edge
Public
Efficiently keep track of changes to genomes
primer bioinformatics genome edge genome-annotation prefix-tree ncbi-blast gff
Python
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MIT License
•4•38•4•5•Updated Jul 22, 2024Jul 22, 2024
geckopy
Public
Enzyme-constrained genome-scale models in python
systems-biology thermodynamics data-integration proteomics kinetics omics enzyme-constraints
Python
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Apache License 2.0
•7•25•5•1•Updated Oct 25, 2023Oct 25, 2023
fluoride
Public
Automating the creation of microservices in AWS!
Python
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MIT License
•1•3•1•1•Updated Aug 22, 2022Aug 22, 2022
shepard
Public
Automating the creation of batch processing workflows in AWS!
Python
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MIT License
•7•49•1•2•Updated Apr 5, 2022Apr 5, 2022
seqviz
Public
DNA sequence viewer supporting custom, GenBank, FASTA, NCBI accession, and iGEM input.
TypeScript
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MIT License
•54•1•0•0•Updated Dec 23, 2021Dec 23, 2021
vaccinetime
Public
A bot by @dpca from @ginkgobioworks, helping you find open vaccine appointments in Massachusetts
Ruby
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Apache License 2.0
•7•73•1•1•Updated May 13, 2021May 13, 2021
curious-js
Public
JavaScript consumer code for Curious APIs.
xhr ajax query-language curious javascript promise
JavaScript
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MIT License
•5•4•1•0•Updated Apr 29, 2021Apr 29, 2021
pymzML
Public
pymzML - an interface between Python and mzML Mass spectrometry Files
Python
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GNU Lesser General Public License v3.0
•92•3•0•0•Updated Aug 16, 2020Aug 16, 2020
sars-cov-2-synthesis
Public
Ginkgo SARS-CoV-2 synthesis efforts: overviews and data
Shell
•0•12•0•0•Updated Jun 7, 2020Jun 7, 2020
ontology-clean
Public
Clean and organize metadata with ontologies
Python
•1•2•0•0•Updated Nov 23, 2019Nov 23, 2019
pychemy
Public
Python helpers for handling chemical formulas.
chemistry cheminformatics mass-spectrometry formulas
Python
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MIT License
•6•5•0•0•Updated Feb 14, 2019Feb 14, 2019
pypiserver
Public
Minimal PyPI server for uploading & downloading packages with pip/easy_install
Python
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Other
•303•0•0•0•Updated Jan 28, 2019Jan 28, 2019
graphene-django-extras
Public
Extras functionalities for Graphene-Django
Python
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MIT License
•108•0•0•1•Updated Jan 28, 2019Jan 28, 2019
igv.js
Public
Embeddable genomic visualization component based on the Integrative Genomics Viewer
JavaScript
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MIT License
•230•1•0•1•Updated Jan 18, 2019Jan 18, 2019
docker-registry-client
Public
A Python REST client for the Docker Registry
Python
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Apache License 2.0
•58•0•0•0•Updated Jan 16, 2019Jan 16, 2019
grafana-logstream
Public archive
CSS
•
MIT License
•0•2•0•0•Updated Jun 30, 2018Jun 30, 2018
plotly-plot
Public
Polymer element for the plotly.js library
polymer plotly plotlyjs bower plot polymer-element
JavaScript
•1•21•1•0•Updated Apr 26, 2018Apr 26, 2018
curious
Public archive
Graph-based data exploration tool
query django sql graph-database query-language
Python
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MIT License
•5•8•0•0•Updated Apr 6, 2018Apr 6, 2018
celery
Public
Distributed Task Queue (development branch)
Python
•
Other
•4.7k•0•0•0•Updated Dec 11, 2017Dec 11, 2017
xcms
Public
Ginkgo Bioworks' extensions and fixes to XCMS
metabolomics mass-spectrometry xcms lipidomics gcms lcms
R
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Other
•2•1•0•1•Updated Nov 15, 2017Nov 15, 2017
giraffe-ui
Public
Javascript visualization of features on a sequence
JavaScript
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Other
•1•0•0•0•Updated Sep 27, 2017Sep 27, 2017
scatter-matrix
Public
Explore data matrix using scatterplot matrix
JavaScript
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MIT License
•35•0•0•0•Updated Aug 23, 2017Aug 23, 2017
calibrate
Public
Create and use linear- and power-regression based calibration curves
linear-regression regression calibration quantification power-regression calibration-curve
Python
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MIT License
•4•0•0•0•Updated May 1, 2017May 1, 2017
react-curious
Public
React data container for curious-js
MIT License
•0•0•0•0•Updated Feb 23, 2017Feb 23, 2017
spserver
Public
Node static page server for quickly getting MVVM running
JavaScript
•
Other
•2•1•0•0•Updated Dec 24, 2016Dec 24, 2016
regression-js
Public
A javascript library containing a collection of least squares fitting methods
JavaScript
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MIT License
•131•1•0•0•Updated Dec 19, 2016Dec 19, 2016