Repositories list

• quality-control-wgs

  Public
  GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations

  Jupyter Notebook

  •

  Apache License 2.0

  •4•19•3•0•Updated Aug 9, 2025Aug 9, 2025

• vrs-python

  Public
  GA4GH Variation Representation Python Implementation

  bioinformaticsgenomicsga4gh

  Python

  •

  Apache License 2.0

  •33•58•61•8•Updated Aug 1, 2025Aug 1, 2025

• data-repository-service-schemas

  Public
  A repository for the schemas used for the Data Repository Service.

  Apache License 2.0

  •54•62•69•23•Updated Aug 1, 2025Aug 1, 2025

• va-spec-python

  Public
  GA4GH Variation Annotation Python Implementation

  bioinformaticsgenomicsga4gh

  Python

  •

  Apache License 2.0

  •2•1•2•2•Updated Aug 1, 2025Aug 1, 2025

• cat-vrs-python

  Public
  GA4GH Categorical Variation Representation Python Implementation

  bioinformaticsgenomicsga4gh

  Python

  •

  Apache License 2.0

  •3•1•3•1•Updated Aug 1, 2025Aug 1, 2025

• workflow-execution-service-schemas

  Public
  The WES API is a standard way to run and manage portable workflows.

  workflowwdlga4gh+ 1cwl

  Apache License 2.0

  •38•85•54•7•Updated Jul 31, 2025Jul 31, 2025

• tool-registry-service-schemas

  Public
  APIs for discovering genomics tools, their metadata and their containers

  apitoolworkflow+ 3wdlga4ghcwl

  Shell

  •

  Apache License 2.0

  •18•31•26•1•Updated Jul 30, 2025Jul 30, 2025

• va-spec

  Public
  An information model for representing variant annotations.

  Jupyter Notebook

  •

  Apache License 2.0

  •6•21•108•3•Updated Jul 29, 2025Jul 29, 2025

• vrs

  Public
  Extensible specification for representing and uniquely identifying biological sequence variation

  bioinformaticsgenomicsvariation

  Jupyter Notebook

  •

  Apache License 2.0

  •38•92•28•0•Updated Jul 29, 2025Jul 29, 2025

• w3id.org

  Public
  Forwarding links and rewrite rules for w3id.org

  HTML

  •1.4k•3•0•1•Updated Jul 21, 2025Jul 21, 2025

• cat-vrs

  Public
  A terminology and data model for describing categorical variation concepts.

  Makefile

  •

  Apache License 2.0

  •3•4•18•2•Updated Jul 19, 2025Jul 19, 2025

• TASC

  Public
  TASC aids the harmonisation of aspects of GA4GH's various products that would otherwise prevent different products from being used together conveniently.

  interoperabilityharmonisationtechnical-alignment

  9•10•22•2•Updated Jul 18, 2025Jul 18, 2025

• approval-tracker

  Public
  GitHub repository for tracking the progress of specification approval

  0•2•8•0•Updated Jul 18, 2025Jul 18, 2025

• example_category.example_type.example-name

  Public
  Example repo for TASC

  Apache License 2.0

  •0•0•0•0•Updated Jul 14, 2025Jul 14, 2025

• 2025-catvar-call-to-action

  Public
  Jupyter Notebook

  •0•0•1•0•Updated Jul 7, 2025Jul 7, 2025

• experiments-metadata

  Public
  The Experiments Metadata Standard Group focuses on defining a minimal set of metadata properties for genomic datasets, to make them usable in primarily in a discovery context.

  Apache License 2.0

  •0•3•2•0•Updated Jun 20, 2025Jun 20, 2025

• connect-2025-hackathon

  Public
  April Connect 2025 hackathon session

  Python

  •

  Apache License 2.0

  •0•0•0•2•Updated Jun 19, 2025Jun 19, 2025

• htsget-compliance

  Public
  Compliance testing for htsget deployments

  Python

  •

  Apache License 2.0

  •3•1•2•2•Updated Jun 19, 2025Jun 19, 2025

• mesh-card-schema

  Public
  A repository for prototyping Mesh Cards as a potential new standard from the Cloud WS.

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Jun 12, 2025Jun 12, 2025

• openapi-test-runner

  Public
  An application allowing the TES servers to test their conformance to TES Specifications

  HTML

  •

  Apache License 2.0

  •6•4•8•6•Updated Jun 10, 2025Jun 10, 2025

• schema-registry

  Public
  Specification for schema registry API

  schema-registry

  Apache License 2.0

  •0•0•9•1•Updated Jun 9, 2025Jun 9, 2025

• ga4gh-registry

  Public
  Implementation registry service for cataloguing implementations of GA4GH standards

  HTML

  •

  Apache License 2.0

  •2•5•0•2•Updated Jun 4, 2025Jun 4, 2025

• large-scale-genomics-wiki

  Public
  Homepage for the Large Scale Genomics Work Stream

  3•9•1•0•Updated Jun 2, 2025Jun 2, 2025

• refget

  Public
  GA4GH Refget specifications docs

  collectiondigestfasta+ 1sequence

  9•16•20•0•Updated May 28, 2025May 28, 2025

• ga4gh-starter-kit-common

  Public
  Common utils library for GA4GH Starter Kit web services

  starter-kit

  Java

  •

  Apache License 2.0

  •2•1•6•2•Updated May 23, 2025May 23, 2025

• task-execution-schemas

  Public
  Apache License 2.0

  •30•89•43•7•Updated May 16, 2025May 16, 2025

• gks-portal

  Public
  MIT License

  •1•1•26•0•Updated May 14, 2025May 14, 2025

• drs-compliance-suite

  Public
  Tests to verify the compliance of a DRS implementation with GA4GH DRS specification

  Python

  •

  Apache License 2.0

  •1•0•9•4•Updated May 6, 2025May 6, 2025

• gks-metaschema

  Public
  Tools and scripts for parsing the GKS standards metaschemas

  Python

  •

  Apache License 2.0

  •2•0•8•0•Updated May 1, 2025May 1, 2025

• Get-Started-with-GA4GH-APIs

  Public
  ISMB 2022 tutorial on FASP and Starter Kit

  Jupyter Notebook

  •

  Apache License 2.0

  •2•6•5•1•Updated Apr 24, 2025Apr 24, 2025