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    35 repositories

    • wf-template

      Public
      Nextflow workflow template repository
      Python
      •
      Other
      •35•18•0•0•Updated Mar 25, 2025Mar 25, 2025

    • fastcat

      Public
      Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
      C
      •
      Other
      •4•35•3•0•Updated Mar 25, 2025Mar 25, 2025

    • wf-clone-validation

      Public
      Python
      •
      Other
      •21•29•6•0•Updated Mar 21, 2025Mar 21, 2025

    • wf-human-variation

      Public
      Nextflow
      •
      Other
      •58•116•31•0•Updated Mar 20, 2025Mar 20, 2025

    • wf-metagenomics

      Public
      Metagenomic classification of long-read sequencing data
      Python
      •
      Other
      •24•77•1•0•Updated Mar 18, 2025Mar 18, 2025

    • wf-basecalling

      Public
      Nextflow
      •
      Other
      •19•37•16•1•Updated Mar 18, 2025Mar 18, 2025

    • epi2me-labs.github.io

      Public
      HTML
      •2•8•0•0•Updated Mar 17, 2025Mar 17, 2025

    • bed-bugs

      Public
      bed-bugs website
      JavaScript
      •0•0•0•0•Updated Mar 17, 2025Mar 17, 2025

    • wf-single-cell

      Public
      Python
      •
      Other
      •43•85•13•0•Updated Mar 14, 2025Mar 14, 2025

    • ezcharts

      Public
      Python
      •
      Other
      •0•18•0•0•Updated Mar 7, 2025Mar 7, 2025

    • epi2me-docs

      Public
      HTML
      •0•0•0•0•Updated Mar 5, 2025Mar 5, 2025

    • wf-hereditary-cancer

      Public
      Nextflow
      •
      Other
      •0•2•1•0•Updated Feb 25, 2025Feb 25, 2025

    • wf-somatic-variation

      Public
      Nextflow
      •
      Other
      •11•17•13•0•Updated Feb 18, 2025Feb 18, 2025

    • wf-bacterial-genomes

      Public
      Small variant calling for haploid samples
      Python
      •
      Other
      •17•34•10•1•Updated Feb 14, 2025Feb 14, 2025

    • wf-aav-qc

      Public
      Python
      •
      Other
      •8•5•10•0•Updated Feb 14, 2025Feb 14, 2025

    • wf-cas9

      Public
      Nextflow
      •
      Other
      •2•6•3•0•Updated Feb 14, 2025Feb 14, 2025

    • wf-mpx

      Public
      Nextflow
      •
      Other
      •6•5•1•0•Updated Feb 14, 2025Feb 14, 2025

    • wf-pore-c

      Public
      Nextflow
      •
      Other
      •9•37•6•0•Updated Feb 14, 2025Feb 14, 2025

    • wf-flu

      Public
      Nextflow
      •
      Other
      •5•17•2•0•Updated Feb 14, 2025Feb 14, 2025

    • wf-amplicon

      Public
      Python
      •
      Other
      •8•30•4•0•Updated Feb 13, 2025Feb 13, 2025

    • wf-alignment

      Public
      Nextflow
      •
      Other
      •22•27•4•0•Updated Feb 13, 2025Feb 13, 2025

    • wf-transcriptomes

      Public
      Nextflow
      •
      Other
      •35•89•22•1•Updated Jan 3, 2025Jan 3, 2025

    • wf-16s

      Public
      Nextflow
      •
      Other
      •5•29•2•0•Updated Dec 16, 2024Dec 16, 2024

    • wf-artic

      Public
      ARTIC SARS-CoV-2 workflow and reporting
      Nextflow
      •
      Other
      •34•50•7•0•Updated Dec 3, 2024Dec 3, 2024

    • wf-tb-amr

      Public
      Python
      •
      Other
      •1•4•1•0•Updated Oct 18, 2024Oct 18, 2024

    • modbam2bed

      Public
      C
      •
      Other
      •8•47•0•0•Updated Aug 23, 2024Aug 23, 2024

    • pore-c-py

      Public
      Python
      •
      Other
      •4•13•1•0•Updated Aug 14, 2024Aug 14, 2024

    • pychopper

      Public
      cDNA read preprocessing
      Python
      •
      Other
      •9•65•11•0•Updated Jul 25, 2024Jul 25, 2024

    • kraken2-server

      Public
      Kraken2 Server
      C++
      •
      Other
      •4•21•1•0•Updated Jan 23, 2024Jan 23, 2024

    • igv-jupyterlab

      Public archive
      Integrate Genome Viewer for JupyterLab 3
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•9•0•0•Updated Aug 25, 2023Aug 25, 2023