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    14 repositories

    • deeporigin-client

      Public
      Deep Origin CLI and Python client
      pythoncommand-linelife-sciencessciopsdeep-origin
      Python
      •
      MIT License
      •0•9•2•1•Updated Jan 16, 2025Jan 16, 2025

    • smartdatafactory-experiments

      Public
      Source code for Smart Distributed Data Factory ML models (see preprint. https://www.biorxiv.org/content/10.1101/2024.10.22.619651v2)
      Python
      •
      MIT License
      •1•2•0•10•Updated Jan 13, 2025Jan 13, 2025

    • mathjs

      Public
      An extensive math library for JavaScript and Node.js
      JavaScript
      •
      Apache License 2.0
      •1.2k•0•0•5•Updated Oct 11, 2024Oct 11, 2024

    • snakemake-executor-plugin-deeporigin

      Public
      A snakemake executor plugin for submission of jobs to Deeporigin
      Python
      •
      MIT License
      •8•0•0•0•Updated Jun 28, 2024Jun 28, 2024

    • dna-seq-varlociraptor

      Public
      A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
      Python
      •
      MIT License
      •40•0•0•0•Updated Jun 21, 2024Jun 21, 2024

    • snakemake-storage-plugin-deeporigin

      Public
      A Snakemake storage plugin for S3 API storage (AWS S3, MinIO, etc.)
      Python
      •
      MIT License
      •11•0•0•1•Updated Jun 14, 2024Jun 14, 2024

    • rna-seq-star-deseq2

      Public
      RNA-seq workflow using STAR and DESeq2
      Python
      •
      MIT License
      •205•0•0•0•Updated Jun 14, 2024Jun 14, 2024

    • .github

      Public
      Public profile of Formic Labs
      0•1•0•0•Updated May 31, 2024May 31, 2024

    • stag-mwc

      Public
      StaG Metagenomic Workflow Collaboration
      Python
      •
      MIT License
      •13•0•0•0•Updated May 1, 2024May 1, 2024

    • nf-shardold1

      Public archive
      Nextflow runs monitoring and organisation UI
      TypeScript
      •
      MIT License
      •10•0•0•0•Updated Feb 1, 2024Feb 1, 2024

    • webpack-bug

      Public
      JavaScript
      •0•0•0•4•Updated Aug 30, 2023Aug 30, 2023

    • temp-kubevirt-install

      Public
      0•0•0•0•Updated Feb 28, 2023Feb 28, 2023

    • d2vm

      Public
      Build Virtual Machine Image from Dockerfile or Docker image
      Go
      •
      Apache License 2.0
      •39•0•0•0•Updated Feb 15, 2023Feb 15, 2023

    • docker-to-linux

      Public
      Make bootable Linux disk image abusing Docker
      Makefile
      •94•0•0•0•Updated Jan 2, 2023Jan 2, 2023