USC Division of Biostatistics

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135 repositories

PM566-bots
Public
1•0•0•0•Updated Jan 5, 2026Jan 5, 2026
PM516
Public
0•0•0•0•Updated Dec 19, 2025Dec 19, 2025
xrnet
Public
R Package for Hierarchical Regularized Regression to Incorporate External Data
R
•3•10•2•0•Updated Dec 17, 2025Dec 17, 2025
annoq-database
Public
Python
•0•0•2•0•Updated Dec 16, 2025Dec 16, 2025
fmcmc
Public
A friendly MCMC framework
r parallel-computing bayesian-inference adaptive r-package mcmc markov-chain-monte-carlo metropolis-hastings
R
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Other
•7•16•7•1•Updated Dec 13, 2025Dec 13, 2025
barryr
Public
R bindings for the barry C++ library, your go-to motif accountant
statistics rstats r-package r-programming r-library motifs
C++
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Other
•0•0•0•0•Updated Dec 9, 2025Dec 9, 2025
annoq-data-builder
Public
Shell
•0•0•3•0•Updated Dec 6, 2025Dec 6, 2025
annoq-api
Public
Python
•0•0•0•0•Updated Dec 6, 2025Dec 6, 2025
annoq-site
Public
TypeScript
•2•0•23•1•Updated Dec 6, 2025Dec 6, 2025
annoq-api-v2
Public
Python
•1•0•9•0•Updated Dec 6, 2025Dec 6, 2025
Annoq_Overrepr_Workflow
Public
A workflow to query Annoq and run the overrepresentation
TypeScript
•2•0•1•0•Updated Dec 5, 2025Dec 5, 2025
aphylo
Public
Statistical inference of genetic functions in phylogenetic trees
r annotations inference phylogenetics r-package rcpparmadillo
R
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Other
•2•6•8•0•Updated Dec 4, 2025Dec 4, 2025
PM566
Public
USC's Introduction to Health Data Science
data-science machine-learning course dataviz course-materials datascience rstats webscraping
R
•29•17•16•0•Updated Nov 26, 2025Nov 26, 2025
software-dev
Public
Coding Standards for the USC Biostats group
r hpc reproducible-research standards reproducibility
HTML
•8•36•0•1•Updated Nov 22, 2025Nov 22, 2025
barry
Public
barry: Your go-to motif accountant
graph motif enumeration ergm exponential-family counting-statistics change-statistics
C++
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MIT License
•0•8•1•0•Updated Nov 20, 2025Nov 20, 2025
dnam-roi
Public
MIT License
•0•0•0•0•Updated Nov 10, 2025Nov 10, 2025
ReadVCF
Public
R package to quickly read VCF files. The packages requires the Bioconductor package rhtslib to compile.
C++
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MIT License
•0•0•0•0•Updated Nov 4, 2025Nov 4, 2025
AnnoQR
Public
R client wrap for AnnoQ API
R
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MIT License
•3•2•4•0•Updated Nov 4, 2025Nov 4, 2025
annoq-py
Public
Python package for annoq-api-v2
Python
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MIT License
•2•0•0•0•Updated Nov 4, 2025Nov 4, 2025
PM566-whoami
Public
154•0•0•0•Updated Sep 19, 2025Sep 19, 2025
rbootcamp
Public
R boot camp: Scientific Computing
education tutorial r simulation scientific-computing
HTML
•16•29•5•0•Updated Aug 21, 2025Aug 21, 2025
SNP-Annotation-Agreement-and-Downstream-Impact-Analysis
Public
Code and data for analyzing SNP annotation agreement across ANNOVAR, SnpEff, and VEP using Ensembl and RefSeq gene models. Includes reproducible scripts for genome-wide analysis, a colorectal cancer case study, and assessment of downstream pathway interpretation.
Python
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MIT License
•0•0•0•0•Updated Aug 6, 2025Aug 6, 2025
LAsBEST
Public
Repository of USC's LA's BEST program. https://lasbest.usc.edu/
training education datascience biostatistics rstats rprogramming nih
HTML
•7•3•1•0•Updated Jul 21, 2025Jul 21, 2025
PM520
Public
PM520 Advanced Statistical Computing
statistical-computing jax
Jupyter Notebook
•4•14•0•0•Updated Apr 18, 2025Apr 18, 2025
SNP-to-Overrepresentation
Public
Python
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Apache License 2.0
•0•0•0•0•Updated Apr 3, 2025Apr 3, 2025
MRIreduce
Public
R
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The Unlicense
•2•0•0•1•Updated Jan 27, 2025Jan 27, 2025
MethCon5
Public
Identify and rank CpG DNA methylation conservation along the human genome
R
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Other
•0•0•0•0•Updated Jan 22, 2025Jan 22, 2025
.github
Public
Will contain details for our organization's landing page
0•0•0•0•Updated Jan 22, 2025Jan 22, 2025
geese-simulations
Public
R
•0•0•0•0•Updated Dec 13, 2024Dec 13, 2024
partition
Public
A fast and flexible framework for data reduction in R
r data-reduction dimensionality-reduction partitional-clustering
HTML
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Other
•4•37•2•0•Updated Nov 10, 2024Nov 10, 2024