Repositories list

• rfam-website

  Public
  Rfam website source code

  bioinformaticsperlncrna+ 1docker

  JavaScript

  •

  Apache License 2.0

  •2•5•16•1•Updated Nov 14, 2024Nov 14, 2024

• rfam-docs

  Public
  Rfam documentation and help hosted on ReadTheDocs

  documentationsphinxreadthedocs+ 3rstncrnarfam

  Apache License 2.0

  •9•6•1•0•Updated Nov 13, 2024Nov 13, 2024

• rfam-batch-search

  Public
  Updated version of Rfam's search API

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 1, 2024Nov 1, 2024

• rfam-production

  Public
  Rfam production pipeline

  pythonbioinformaticsncrna

  Python

  •

  Apache License 2.0

  •3•5•54•4•Updated Oct 11, 2024Oct 11, 2024

• rfam-family-pipeline

  Public
  Backend for the Rfam family building pipeline

  bioinformaticsperlncrna

  Perl

  •2•3•20•1•Updated Oct 11, 2024Oct 11, 2024

• rfam-taxonomy

  Public
  Code and data for analysing the taxonomic distribution of Rfam families

  mysqlpythonbioinformatics+ 4csvtaxonomyrnarfam

  Python

  •

  Apache License 2.0

  •1•6•0•0•Updated Nov 17, 2023Nov 17, 2023

• rfam-3d-seed-alignments

  Public
  A pipeline for adding RNA 3D structures to Rfam seed alignments

  dockerbioinformaticspython3+ 2rna3d

  Python

  •

  Apache License 2.0

  •0•1•6•0•Updated Nov 6, 2023Nov 6, 2023

• rfam-rfreport

  Public
  Interactive reports for Rfam curation

  Python

  •0•0•0•0•Updated Jul 11, 2023Jul 11, 2023

• rfam-tutorials

  Public
  Learn how to annotate a genome with Rfam families using Infernal

  dockerbioinformaticstutorial+ 1ncrna

  Dockerfile

  •2•3•1•0•Updated May 15, 2023May 15, 2023

• rfam-internal-docs

  Public
  Internal documentation for the Rfam team.

  Python

  •0•0•0•0•Updated Apr 18, 2023Apr 18, 2023

• trackhub-testing

  Public
  A repo to test out building trackhubs again, will be moved into Rfam later

  Nextflow

  •0•0•0•0•Updated Sep 8, 2022Sep 8, 2022

• rfam-zwd-import

  Public
  Code for importing ZWD into RNAcentral

  pythondockerbioinformatics+ 1ncrna

  Python

  •1•1•0•0•Updated Oct 20, 2021Oct 20, 2021

• rfam-cloud-toolkit

  Public
  Terraform configuration to deploy nfs server on cloud infrastructures

  HCL

  •2•0•0•1•Updated Jul 27, 2021Jul 27, 2021

• rfam-pywikibot

  Public
  Rfam fork of wikimedia/pywikibot for managing Rfam wiki content

  pythonwikipediarna

  Python

  •

  MIT License

  •194•0•0•0•Updated Jun 22, 2021Jun 22, 2021

• KubeNow

  Public
  Deploy Kubernetes. Now!

  HCL

  •

  Apache License 2.0

  •40•0•0•0•Updated Jun 27, 2019Jun 27, 2019

• rfam-2d-browser

  Public archive
  Browse Rfam secondary structures by RNA type

  pythonrnasecondary-structure+ 1rfam

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Feb 26, 2019Feb 26, 2019

• rfam-pubmed-id-highlighter

  Public
  Chrome extension for identifying new literature for Rfam curation

  google-spreadsheetpubmedchrome-extension

  JavaScript

  •

  Apache License 2.0

  •1•2•0•0•Updated Jun 29, 2016Jun 29, 2016