Repositories list

• mini-project-marionnyaboke

  Public
  mini-project-marionnyaboke created by GitHub Classroom

  Jupyter Notebook

  •0•0•0•1•Updated Dec 8, 2023Dec 8, 2023

• PHATE

  Public
  PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

  Python

  •

  GNU General Public License v2.0

  •76•0•0•0•Updated Jan 3, 2023Jan 3, 2023

• awesome-single-cell

  Public
  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  MIT License

  •1k•1•0•0•Updated Dec 2, 2022Dec 2, 2022

• Workflows_and_package_management

  Public
  Reproducibility and package management : workflow languages (CWL, Snakemake, Conda).

  Python

  •60•0•0•0•Updated Aug 3, 2022Aug 3, 2022

• Seminar_Presentations

  Public
  9•0•0•0•Updated May 3, 2022May 3, 2022

• MAESTRO

  Public
  Single-cell Transcriptome and Regulome Analysis Pipeline

  C

  •

  GNU General Public License v3.0

  •78•0•0•0•Updated Jul 26, 2021Jul 26, 2021

• Python4Bioinformatics2020

  Public
  Jupyter Notebook

  •24•1•0•0•Updated Dec 18, 2020Dec 18, 2020

• firstrepo-Jelioth

  Public
  firstrepo-Jelioth created by GitHub Classroom

  0•0•0•0•Updated Oct 13, 2020Oct 13, 2020

• learningGit

  Public
  GNU General Public License v3.0

  •0•1•0•0•Updated Oct 13, 2020Oct 13, 2020

• firstrepo-natty2012

  Public
  firstrepo-natty2012 created by GitHub Classroom

  0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

• firstrepo-hesbornomwandho

  Public
  firstrepo-hesbornomwandho created by GitHub Classroom

  0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

• firstrepo-clementmlay

  Public
  firstrepo-clementmlay created by GitHub Classroom

  0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

• firstrepo-gashanjakim

  Public
  firstrepo-gashanjakim created by GitHub Classroom

  0•1•0•0•Updated Oct 12, 2020Oct 12, 2020

• firstrepo-eunicenjuguna

  Public
  firstrepo-eunicenjuguna created by GitHub Classroom

  0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

• firstrepo-Ruth-Moraa

  Public
  firstrepo-Ruth-Moraa created by GitHub Classroom

  0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

• firstrepo-Nyasita

  Public
  firstrepo-Nyasita created by GitHub Classroom

  0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

• firstrepo-glado718

  Public
  firstrepo-glado718 created by GitHub Classroom

  0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

• firstrepo-sonibk

  Public
  firstrepo-sonibk created by GitHub Classroom

  0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

• firstrepo-Paulahkings

  Public
  firstrepo-Paulahkings created by GitHub Classroom

  0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

• firstrepo-kenmurithi

  Public
  firstrepo-kenmurithi created by GitHub Classroom

  0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

• firstrepo-marionnyaboke

  Public
  firstrepo-marionnyaboke created by GitHub Classroom

  0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

• cloudROSE

  Public
  The CHiP-Seq data ROSE processing results using the H3K27Ac enhancer mark in MCF-7 human cell line, mouse heart and human adrenal gland

  2•0•0•0•Updated Sep 17, 2020Sep 17, 2020

• ATACseqQCWorkshop

  Public
  ATACseqQC tutorials for BioC 2019 workshop

  Dockerfile

  •

  Other

  •9•0•0•0•Updated Jul 28, 2020Jul 28, 2020

• 2020_scWorkshop

  Public
  Code and data repository for the 2020 physalia course on single cell RNA sequencing.

  Shell

  •40•0•0•0•Updated Apr 15, 2020Apr 15, 2020

• netSmooth

  Public
  netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

  R

  •6•0•0•0•Updated Dec 16, 2019Dec 16, 2019

• DGE_workshop

  Public
  HTML

  •170•0•0•0•Updated Aug 8, 2019Aug 8, 2019

• In-depth-NGS-Data-Analysis-Course

  Public
  Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

  HTML

  •

  Other

  •269•0•0•0•Updated Nov 7, 2017Nov 7, 2017

• SDIntroToR

  Public
  Introduction to R

  MIT License

  •5•0•0•0•Updated Dec 15, 2015Dec 15, 2015