Repositories list

• pygscatalog

  Public
  Python applications and libraries for working with PGS data and the PGS Catalog

  polygenic-risk-scoresgenetic-risk-scorepolygenic-scores+ 1pgs-catalog

  Python

  •

  Apache License 2.0

  •3•7•7•5•Updated Mar 12, 2025Mar 12, 2025

• pgsc_calc

  Public
  The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation

  workflownextflowpolygenic-risk-scores+ 7prspgsgenetic-risk-scorepolygenic-scorespgs-catalogpolygenic-scorepolygenic-risk-score

  Nextflow

  •

  Apache License 2.0

  •25•126•17•1•Updated Mar 11, 2025Mar 11, 2025

• PGS_Catalog

  Public
  An open database of polygenic scores and relevant metadata needed to apply and evaluate them correctly.

  websitedjangorest-api+ 2polygenic-scorespgs-catalog

  Python

  •

  Apache License 2.0

  •5•10•25•4•Updated Feb 27, 2025Feb 27, 2025

• pgs_template_validator

  Public
  Standalone Python validator for the PGS Catalog Curation Template (Metadata)

  Python

  •

  Apache License 2.0

  •2•0•0•1•Updated Dec 4, 2024Dec 4, 2024

• ebi-2024-pgsc_calc-webinar

  Public
  Workshop material for the EBI Training webinar about pgsc_calc.

  HTML

  •

  Creative Commons Attribution 4.0 International

  •1•0•0•0•Updated Dec 2, 2024Dec 2, 2024

• pgs-harmonizer

  Public
  A pipeline to format and harmonise Polygenic Score (PGS) Catalog Scoring Files within and between different genome builds.

  Python

  •

  Apache License 2.0

  •2•4•5•1•Updated Sep 3, 2024Sep 3, 2024

• fraposa_pgsc

  Public
  Tools to perform ancestry projection to a reference dataset within the calculator pipeline (pgsc_calc)

  pcagenetic-ancestrygenomic-ancestry

  Python

  •

  Other

  •3•4•5•0•Updated Aug 8, 2024Aug 8, 2024

• pgscatalog_utils

  Public archive
  (superseded by pygscatalog) Utilities for working with PGS Catalog API and scoring files

  polygenic-risk-scoresgenetic-risk-scorepolygenic-scores+ 1pgs-catalog

  Python

  •

  Apache License 2.0

  •3•5•8•0•Updated Jun 25, 2024Jun 25, 2024

• pgs_metadata_exports

  Public
  Package to export PGS Catalog metadata

  Python

  •

  Apache License 2.0

  •1•0•0•0•Updated Nov 16, 2023Nov 16, 2023

• pgs_variants_coords

  Public
  Repository to fetch and store the variant locations from Polygenic Score files, using their rsIDs

  Python

  •

  Apache License 2.0

  •1•0•0•1•Updated Nov 1, 2023Nov 1, 2023

• pgs_scoringfile_validator

  Public archive
  Formatting and validating scripts for Polygenic Scoring files

  Python

  •4•0•0•0•Updated Jun 8, 2022Jun 8, 2022