Repositories list

• openprotein-python

  Public
  Simple python interface for the OpenProtein.AI REST API.

  pythonmachine-learningproteins+ 4language-modelprotein-embeddingprotein-language-modelgenerative-ai

  Python

  •

  Other

  •0•12•0•0•Updated Aug 8, 2025Aug 8, 2025

• RFdiffusion

  Public
  Code for running RFdiffusion

  Python

  •

  Other

  •487•0•0•0•Updated Jul 31, 2025Jul 31, 2025

• ProteinGym

  Public
  Official repository for the ProteinGym benchmarks

  HTML

  •

  MIT License

  •44•0•0•0•Updated Apr 30, 2025Apr 30, 2025

• flash-attention

  Public
  Fast and memory-efficient exact attention

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1.9k•0•0•2•Updated Mar 25, 2025Mar 25, 2025

• faplm

  Public
  FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models

  Python

  •

  MIT License

  •13•0•0•0•Updated Jan 1, 2025Jan 1, 2025

• PoET

  Public
  Inference code for PoET: A generative model of protein families as sequences-of-sequences

  deep-learningproteinsgenerative-model+ 3protein-sequencesprotein-engineeringprotein-language-model

  Python

  •

  MIT License

  •5•78•2•0•Updated Apr 24, 2024Apr 24, 2024

• tool-make-aligned-dataset

  Public
  Python

  •0•0•0•0•Updated Mar 20, 2024Mar 20, 2024

• swagger-ui

  Public
  Swagger UI is a collection of HTML, JavaScript, and CSS assets that dynamically generate beautiful documentation from a Swagger-compliant API.

  JavaScript

  •

  Apache License 2.0

  •9.2k•0•0•0•Updated Oct 11, 2022Oct 11, 2022

• atomium

  Public
  Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)

  Python

  •

  MIT License

  •19•0•0•0•Updated Oct 9, 2021Oct 9, 2021

• PyTorch-LBFGS

  Public
  A PyTorch implementation of L-BFGS.

  Python

  •

  MIT License

  •70•0•0•0•Updated Oct 21, 2020Oct 21, 2020