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    21 repositories

    • picopili

      Public
      Fork of ricopili for development of pipeline for family-based data
      Python
      •7•19•6•0•Updated Jun 22, 2025Jun 22, 2025

    • rna-seq-web

      Public
      A web tool for browsing publicly available RNA-seq datasets and derived co-expression networks.
      JavaScript
      •1•5•0•15•Updated Aug 6, 2024Aug 6, 2024

    • ukb_common

      Public
      Python
      •
      MIT License
      •4•11•1•2•Updated Mar 1, 2024Mar 1, 2024

    • UKBB_ldsc_r2

      Public
      genetic correlation between phenotypes in the UK biobank
      Rebol
      •
      MIT License
      •5•0•0•0•Updated Feb 22, 2024Feb 22, 2024

    • whole_genome_analysis_pipeline

      Public
      0•20•0•0•Updated Jun 12, 2023Jun 12, 2023

    • UK_Biobank_GWAS

      Public
      Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release
      Python
      •108•383•9•0•Updated Jun 7, 2023Jun 7, 2023

    • Project_Template

      Public template
      This is a template for a project repository that can be cloned/copied by the analysts and used to keep track of their projects.
      Shell
      •
      MIT License
      •0•0•2•0•Updated May 17, 2023May 17, 2023

    • UKBB_ldsc

      Public
      Sample code for ldsc analyses in UKBB
      ukbiobankheritabilityldscore
      ukbiobankheritabilityldscore
      CSS
      •13•33•1•0•Updated May 4, 2023May 4, 2023

    • GWASpy

      Public
      GWAS QC, PCA, haplotype phasing, genotype imputation
      Python
      •
      MIT License
      •5•0•0•0•Updated Jan 25, 2023Jan 25, 2023

    • ukb_exomes

      Public
      Python
      •2•14•5•0•Updated Dec 2, 2022Dec 2, 2022

    • UKBB_ldsc_scripts

      Public
      Scripts used for generating Neale Lab UKB results
      Python
      •3•20•1•0•Updated Oct 11, 2022Oct 11, 2022

    • ccdg_qc

      Public
      Python
      •3•1•0•0•Updated Jul 13, 2022Jul 13, 2022

    • WES_QC_Hail

      Public
      outlineweshail
      outlineweshailexomeqc
      Python
      •0•4•0•0•Updated Feb 4, 2022Feb 4, 2022

    • preimp_qc

      Public
      Python
      •0•4•0•0•Updated Apr 26, 2021Apr 26, 2021

    • cloudtools

      Public archive
      Scripts for working with Google Cloud Dataproc service
      Python
      •
      MIT License
      •24•37•7•0•Updated Jun 19, 2019Jun 19, 2019

    • docker_scripts

      Public
      0•0•0•0•Updated Mar 13, 2019Mar 13, 2019

    • sc_enrichment

      Public
      Cloud-based single-cell enrichment analysis
      Python
      •0•3•0•0•Updated Dec 13, 2018Dec 13, 2018

    • hailathon

      Public
      Jupyter Notebook
      •2•0•0•0•Updated Jul 26, 2018Jul 26, 2018

    • ldsc

      Public
      LD Score Regression (LDSC)
      Python
      •
      GNU General Public License v3.0
      •368•4•0•0•Updated Jun 21, 2018Jun 21, 2018

    • annotationdb

      Public
      Hail annotation database scripts and metadata
      Python
      •2•0•0•0•Updated Oct 26, 2017Oct 26, 2017

    • array_CNV_analysis

      Public
      Example R scripts to run burden and association analysis on array CNV data
      R
      •7•3•0•0•Updated Nov 9, 2016Nov 9, 2016