Repositories list

• TF-chromatin

  Public
  R

  •0•0•0•0•Updated Oct 7, 2024Oct 7, 2024

• SingleMoleculeFootprinting

  Public
  R package for SMF data analysis

  R

  •6•2•2•1•Updated Oct 7, 2024Oct 7, 2024

• Chatsirisupachai_Moene_2024

  Public
  R

  •0•0•0•0•Updated Sep 24, 2024Sep 24, 2024

• bonito

  Public
  A PyTorch Basecaller for Oxford Nanopore Reads

  Python

  •

  Other

  •121•0•0•0•Updated Mar 12, 2024Mar 12, 2024

• Kreibich_2023_5mC_at_enhancers

  Public
  Analysis of Single Molecule Footprinting (SMF) data for the analysis of DNA methylation, chromatin accessibility and TF binding. The repository contains all primary code to reproduce the main analyses for the publication "Single molecule footprinting identifies context-dependent regulation of enhancers by DNA methylation" (Kreibich et al., 2023)

  transcription-factorsepigeneticsdna-methylation+ 2chromatin-accessibiitysingle-molecule-footprinting

  R

  •

  GNU General Public License v3.0

  •0•4•0•0•Updated Feb 29, 2024Feb 29, 2024

• Predoc_2022

  Public
  Datasets for predoc course

  HTML

  •0•0•0•0•Updated Oct 27, 2023Oct 27, 2023

• SingleMoleculeFootprintingData

  Public
  R

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Apr 7, 2021Apr 7, 2021

• Soenmezer_2020_SMF

  Public
  Basic functions for single molecule TF analysis

  R

  •

  GNU General Public License v3.0

  •0•3•0•0•Updated Sep 9, 2020Sep 9, 2020