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@ComputationalPhysiology Computational Physiology at Simula Research Laboratory

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    57 repositories

    • MAD-SSA

      Public
      Tool for analysis of Mitral annulus disjunction and statistical shape analysis
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 7, 2025Aug 7, 2025

    • cardiac-geometriesx

      Public
      Cardiac-geometries for dolfinx
      Python
      •
      MIT License
      •1•5•1•1•Updated Aug 5, 2025Aug 5, 2025

    • circulation

      Public
      Cardiac Circulation Models
      Python
      •
      MIT License
      •0•2•0•1•Updated Aug 5, 2025Aug 5, 2025

    • simcardems

      Public
      Simula Cardiac ElectroMechanics Solver
      Python
      •
      GNU Lesser General Public License v2.1
      •11•11•8•9•Updated Aug 4, 2025Aug 4, 2025

    • mps_motion

      Public
      Library for tracking motion in cardiac mps data
      Python
      •
      MIT License
      •0•1•0•1•Updated Aug 4, 2025Aug 4, 2025

    • modelgraph

      Public
      A tool for visualizing dependencies between different components of your model
      Python
      •
      MIT License
      •0•2•0•1•Updated Aug 4, 2025Aug 4, 2025

    • mps

      Public
      Tools for working with mps files
      image-analysismpscardiacorgan-on-chipheart-on-chip
      Python
      •
      GNU Lesser General Public License v2.1
      •0•2•0•1•Updated Aug 4, 2025Aug 4, 2025

    • cardiac-geometries-core

      Public
      Gmsh files for cardiac geometries
      mesh-generationgmshcardiac
      Python
      •
      MIT License
      •0•0•0•1•Updated Aug 4, 2025Aug 4, 2025

    • ap_features

      Public
      Package to compute features of traces from action potential models
      Python
      •
      GNU Lesser General Public License v2.1
      •3•8•3•1•Updated Aug 4, 2025Aug 4, 2025

    • cardiac-geometries

      Public
      Tool for creating idealised cardiac geometries and microstructure
      geometrymeshcardiac
      Python
      •
      MIT License
      •2•7•0•1•Updated Aug 4, 2025Aug 4, 2025

    • ukb-atlas

      Public
      Generate meshes from UK Biobank atlas
      Python
      •
      MIT License
      •1•5•2•1•Updated Jun 24, 2025Jun 24, 2025

    • sscp25-deep-learning-cardiac-mechanics

      Public
      Example code for SSCP project on Deep Learning for cardiac mechanics
      Python
      •
      MIT License
      •1•1•0•0•Updated Jun 23, 2025Jun 23, 2025

    • simcardemsx

      Public
      Python
      •0•2•0•0•Updated Jun 19, 2025Jun 19, 2025

    • ciucci-2024

      Public
      Source code for reproducing results of ciucci-2024 paper
      Python
      •
      MIT License
      •0•1•0•0•Updated Jun 11, 2025Jun 11, 2025

    • zero-mech

      Public
      Simple 0D mechanics simulator
      Python
      •
      MIT License
      •0•2•0•0•Updated Feb 26, 2025Feb 26, 2025

    • simcardems2

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Feb 22, 2025Feb 22, 2025

    • oasisx

      Public
      Next generation Open Source Navier Stokes solver using FEniCSx
      Python
      •
      MIT License
      •1•6•1•0•Updated Feb 3, 2025Feb 3, 2025

    • constrained_mixture_models

      Public
      Software and documentation for exploring homogenized constrained mixture models for cardiac growth and remodeling
      TeX
      •
      MIT License
      •0•0•0•0•Updated Dec 1, 2024Dec 1, 2024

    • automatic-motion-estimation

      Public
      Source code for reproducing results in the paper "Automatic motion estimation with applications to hiPSC-CMs"
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • gotran

      Public
      Library for declaring and translating ODEs
      Python
      •
      GNU Lesser General Public License v3.0
      •1•2•3•1•Updated Jul 1, 2024Jul 1, 2024

    • goss

      Public
      General ODE System Solver
      cppodeode-solverodeintpython
      C++
      •
      GNU Lesser General Public License v3.0
      •0•3•0•1•Updated Jun 24, 2024Jun 24, 2024

    • simula-lights

      Public
      Tool controlling the lights at KA23
      Python
      •1•0•0•0•Updated Mar 26, 2024Mar 26, 2024

    • simula-tools-meetup

      Public
      researchtoolssoftware
      Jupyter Notebook
      •
      The Unlicense
      •6•0•0•0•Updated Nov 20, 2023Nov 20, 2023

    • pseudo-ecg

      Public
      Library to compute pseudo ECG from bidomain and monodomain simulations
      Python
      •
      MIT License
      •0•3•0•0•Updated Sep 25, 2023Sep 25, 2023

    • cbcbeat

      Public
      An adjoint-enabled framework for computational cardiac electrophysiology
      Python
      •
      GNU Lesser General Public License v3.0
      •0•7•4•1•Updated Sep 24, 2023Sep 24, 2023

    • odesolver

      Public
      General suite of ODE solvers
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 19, 2023Sep 19, 2023

    • mps-database-dashapp

      Public
      Python
      •0•0•0•0•Updated Aug 30, 2023Aug 30, 2023

    • mps_data_parser

      Public
      Tool for parsing information from filenames
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 25, 2023Aug 25, 2023

    • docker_workflows

      Public
      A simple guide on how to use docker in your development workflow
      Jupyter Notebook
      •
      MIT License
      •2•1•0•0•Updated Jun 30, 2023Jun 30, 2023

    • SSCP_2023_project6

      Public
      Model codes and demos for Simula summer school 2023 project 6
      Python
      •0•0•0•0•Updated Jun 29, 2023Jun 29, 2023