Repositories list

• versa_kg_rag_documentation

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

• KG_RAG

  Public
  Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks

  bioinformaticsbiomedical-informaticsknowledge-graph+ 17llamagptknowledge-basecontext-awarebioinformatics-algorithmsbiomedical-applicationsrag+ 10

  Jupyter Notebook

  •

  Apache License 2.0

  •93•678•5•1•Updated Nov 9, 2024Nov 9, 2024

• Ocrelizumab_vs_rituximab

  Public
  Repo for LLM

  Python

  •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

• Biothings4SPOKE

  Public
  Batchfile

  •0•0•0•0•Updated Oct 9, 2024Oct 9, 2024

• SpokeSigv2

  Public
  Python

  •0•1•0•0•Updated Sep 23, 2024Sep 23, 2024

• iMSMS_metabolomics

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Aug 27, 2024Aug 27, 2024

• app_patient_profile_imsms

  Public
  Python

  •

  Apache License 2.0

  •1•0•0•0•Updated Mar 24, 2024Mar 24, 2024

• metapath_dwpc_analysis

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Mar 22, 2024Mar 22, 2024

• spoke_api_demo

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •1•1•0•0•Updated Mar 21, 2024Mar 21, 2024

• IMSGC_federated

  Public
  CLI python scripts for federated analysis

  Python

  •0•0•0•0•Updated Jan 31, 2024Jan 31, 2024

• spoke_35M

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Sep 21, 2023Sep 21, 2023

• EHR-Ranges

  Public
  ipynb for generating EHR lab ranges from patient data

  Jupyter Notebook

  •0•0•0•0•Updated Jun 28, 2023Jun 28, 2023

• VANE

  Public
  Variant Annotation with Network-enhanced Epigenetic data

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated May 5, 2023May 5, 2023

• graphRAIN

  Public
  Python

  •

  Apache License 2.0

  •0•4•0•0•Updated Feb 28, 2023Feb 28, 2023

• spoke_network_analysis

  Public
  Jupyter Notebook

  •0•0•1•0•Updated Nov 2, 2022Nov 2, 2022

• TANDEM

  Public
  This repository holds the code for TANDEM model

  Python

  •

  Apache License 2.0

  •0•1•1•0•Updated Oct 3, 2022Oct 3, 2022

• nasa_spokesig_api

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated May 5, 2022May 5, 2022

• iMSMS_study

  Public
  Gut microbiome study in multiple sclerosis

  HTML

  •4•2•0•0•Updated Apr 15, 2022Apr 15, 2022

• SPOKEsig-Workshop

  Public
  Jupyter Notebook

  •1•1•0•0•Updated Nov 18, 2021Nov 18, 2021

• SPOKEsigs

  Public
  Jupyter Notebook

  •1•2•2•0•Updated Jun 9, 2021Jun 9, 2021

• PSPG_245B

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Mar 3, 2021Mar 3, 2021

• SPOKE_NASA_2020

  Public
  Python

  •1•1•0•0•Updated Dec 31, 2020Dec 31, 2020

• SPOKE_NASA

  Public
  Python

  •1•0•1•0•Updated Dec 31, 2020Dec 31, 2020

• RNAseq

  Public
  RNA-Seq data analysis: whole transcriptome, stranded, dUTP method

  R

  •4•0•0•0•Updated Aug 14, 2020Aug 14, 2020

• SARS-CoV-2-molecular-explorer

  Public
  This repository contains bioinformatic work from my lab in response to the COVID-19 pandemic.

  MIT License

  •0•1•0•0•Updated Apr 6, 2020Apr 6, 2020

• PSEV_guides_2

  Public
  0•0•0•0•Updated May 5, 2019May 5, 2019

• PSEV

  Public
  Python

  •1•3•2•0•Updated Mar 19, 2019Mar 19, 2019

• RNAseq_QuantSeq_Fancy

  Public
  QuantSeq 3'mRNAseq data analysis

  R

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Jan 29, 2019Jan 29, 2019