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    76 repositories

    • CTK

      Public
      A set of common support code for medical imaging, surgical navigation, and related purposes.
      C++
      •
      Apache License 2.0
      •515•0•0•0•Updated Dec 16, 2025Dec 16, 2025

    • free-disk-space

      Public
      :octocat:⚙️🗑️ A GitHub Action to free disk space on an Ubuntu runner.
      MIT License
      •109•12•0•1•Updated Nov 12, 2025Nov 12, 2025

    • BRAINSTools

      Public
      A suite of tools for medical image processing focused on brain analysis
      processingc-plus-plusimagecmakeregistrationclassificationsegmentationclassificationsbrainnamic
      C++
      •
      Apache License 2.0
      •99•126•17•0•Updated Nov 11, 2025Nov 11, 2025

    • GDCM

      Public
      Grassroots DICOM read-only mirror. Only for Pull Request. Please report bug at http://sf.net/p/gdcm
      C++
      •
      Other
      •195•0•0•0•Updated Oct 26, 2025Oct 26, 2025

    • PigSNIPE

      Public
      Python
      •
      Apache License 2.0
      •0•3•0•1•Updated Sep 9, 2025Sep 9, 2025

    • Slicer

      Public
      Multi-platform, free open source software for visualization and image computing.
      C++
      •
      Other
      •680•0•0•0•Updated Jul 13, 2025Jul 13, 2025

    • ITK

      Public
      Insight Toolkit
      C++
      •
      Apache License 2.0
      •715•0•0•0•Updated Jun 24, 2025Jun 24, 2025

    • pyradiomics

      Public
      Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •537•0•0•0•Updated May 13, 2025May 13, 2025

    • dcm-classifier

      Public
      Python
      •
      Apache License 2.0
      •1•4•7•1•Updated Apr 16, 2025Apr 16, 2025

    • MONAI

      Public
      AI Toolkit for Healthcare Imaging
      Python
      •
      Apache License 2.0
      •1.4k•0•0•0•Updated Jul 1, 2024Jul 1, 2024

    • SlicerFiducials

      Public
      A project to manage code for manipulating slicer ficucial
      image-processing3d-slicer
      Python
      •
      GNU General Public License v3.0
      •0•1•0•6•Updated Dec 8, 2022Dec 8, 2022

    • ANTs

      Public
      Advanced Normalization Tools (ANTs)
      C++
      •
      Other
      •394•0•0•0•Updated Jun 9, 2022Jun 9, 2022

    • ukftractography

      Public
      Objective-C
      •31•0•0•1•Updated Mar 30, 2022Mar 30, 2022

    • DTIProcessToolkit

      Public
      DTIProcess is a DTI processing and analysis toolkit developed in UNC and University of Utah
      C++
      •
      Apache License 2.0
      •8•0•0•0•Updated Feb 25, 2022Feb 25, 2022

    • niral_utilities

      Public
      NIRAL Utilities are open-source applications developped at UNC-Chapel Hill in the Neuro Image Research and Analysis Lab (NIRAL)
      C++
      •
      Apache License 2.0
      •12•0•0•0•Updated Feb 17, 2022Feb 17, 2022

    • NAMICExternalProjects

      Public
      A superbuild infrastructure to build all superbuild structures
      CMake
      •8•5•3•0•Updated Feb 14, 2022Feb 14, 2022

    • MRParameterMaps

      Public
      A repository based on this paper http://www.insight-journal.org/browse/publication/237
      C++
      •
      Other
      •1•0•0•0•Updated Feb 13, 2022Feb 13, 2022

    • ITKAdaptiveDenoising

      Public
      C++
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      Apache License 2.0
      •10•0•0•0•Updated Feb 5, 2022Feb 5, 2022

    • BRAINSPydra

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Aug 11, 2021Aug 11, 2021

    • DCMTK

      Public
      WARNING: This is NOT the official upstream DCMTK git repository.
      Other
      •43•0•0•0•Updated Aug 5, 2021Aug 5, 2021

    • MetaIO

      Public
      MetaImage is the text-based tagged file format for medical images that resulted. We have now extended that file format to support a variety of objects that occur in medicine such a tubes (for vessels, needles, etc.), blobs (for arbitrary shaped objects), cubes, spheres, etc. The complete library is known at MetaIO.
      C++
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      Other
      •26•0•0•0•Updated Dec 17, 2020Dec 17, 2020

    • BIDSonym

      Public
      a BIDS app for de-identification of neuroimaging data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •12•0•0•1•Updated Aug 17, 2020Aug 17, 2020

    • freesurfer

      Public
      Neuroimaging analysis and visualization suite
      C++
      •
      Other
      •278•0•0•0•Updated Aug 5, 2020Aug 5, 2020

    • NiftyNet

      Public
      An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
      Python
      •
      Apache License 2.0
      •401•0•0•1•Updated Nov 19, 2019Nov 19, 2019

    • SINAPSE

      Public
      SINAPSE is an interdisciplinary team of computer scientists, software engineers, and medical investigators.
      1•0•16•0•Updated Jul 17, 2019Jul 17, 2019

    • AtlasWerks

      Public archive
      A temporary location to help facilitate cleaning up this code again.
      C++
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      Other
      •3•3•0•0•Updated May 13, 2019May 13, 2019

    • tbb

      Public
      C++
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      Apache License 2.0
      •1.2k•0•0•0•Updated Mar 1, 2019Mar 1, 2019

    • JALMMSE

      Public
      github clone of https://www.nitrc.org/svn/jalmmse_dwi for slicer integration
      CMake
      •0•1•0•0•Updated Jan 14, 2019Jan 14, 2019

    • opencv

      Public
      OpenCV GitHub Mirror
      C++
      •
      Other
      •56k•0•0•0•Updated Oct 17, 2018Oct 17, 2018

    • DTIPrep-1

      Public
      DTIPrep performs a "Study-specific Protocol" based automatic pipeline for DWI/DTI quality control and preparation
      C++
      •
      Apache License 2.0
      •11•0•0•0•Updated Sep 13, 2018Sep 13, 2018