Repositories list

• LLM_usecase

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 23, 2025Apr 23, 2025

• kiwi_api_client

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 22, 2025Apr 22, 2025

• cde-mapper-dashboard

  Public
  CDEMapper Dashboard Prototype

  Vue

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 15, 2025Apr 15, 2025

• UNER_Prompt_Library

  Public
  0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

• medtaxon

  Public
  MedTaxon: Accelerating Biomedical Taxonomy Construction with A Web-based Interactive Tool using Large Language Models

  Vue

  •

  Apache License 2.0

  •0•1•0•0•Updated Mar 24, 2025Mar 24, 2025

• Biomedical-NLP-Benchmarks

  Public
  Benchmark Datasets for BioNLP Tasks

  Python

  •

  Apache License 2.0

  •1•13•0•0•Updated Mar 10, 2025Mar 10, 2025

• CDE-Mapping-Tool

  Public
  Evaluation codes and relevance datasets

  Jupyter Notebook

  •0•1•0•0•Updated Mar 4, 2025Mar 4, 2025

• Kiwi-BERT

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

• SemNovel

  Public
  A New Approach to Detecting Semantic Novelty of Biomedical Publications using Embeddings of Large Language

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 18, 2025Feb 18, 2025

• language-review

  Public
  Language review

  JavaScript

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 17, 2025Feb 17, 2025

• novelty-reviewer

  Public
  An AI-powered novelty reviewer

  Vue

  •

  Apache License 2.0

  •0•1•0•0•Updated Jan 29, 2025Jan 29, 2025

• Kiwi-LLaMA

  Public
  HTML

  •2•6•1•1•Updated Jan 27, 2025Jan 27, 2025

• BIDS-Xu-Lab.github.io

  Public
  Lab Webiste

  Jupyter Notebook

  •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

• covid19-data-index

  Public
  For the website of covid19dataindex.org

  Vue

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 26, 2025Jan 26, 2025

• bike-datasets

  Public
  BIKE Datasets

  Apache License 2.0

  •0•0•8•0•Updated Jan 21, 2025Jan 21, 2025

• Me-LLaMA

  Public
  A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks

  llamamedical-applicationbiomedical-text-mining+ 10clinical-nlpmedical-medical-question-answeringgpt-4large-language-modelsllmchatgpt+ 3

  Python

  •17•147•3•0•Updated Jan 15, 2025Jan 15, 2025

• Dataset_Entity_Extraction

  Public
  Python

  •0•0•0•0•Updated Jan 12, 2025Jan 12, 2025

• Clinical_Entity_Recognition_Using_GPT_models

  Public
  HTML

  •6•17•0•0•Updated Dec 22, 2024Dec 22, 2024

• PheCatcher

  Public
  Repository for TRIPOD NLP paper

  Jupyter Notebook

  •0•0•0•0•Updated Dec 9, 2024Dec 9, 2024

• semantic-novelty

  Public
  A New Approach to Detecting Semantic Novelty of Biomedical Literature

  Apache License 2.0

  •0•0•0•0•Updated Aug 26, 2024Aug 26, 2024

• LLMs4SDoH

  Public
  0•0•0•0•Updated Jun 14, 2024Jun 14, 2024

• LLMindcraft

  Public
  Python

  •

  Other

  •2•0•0•0•Updated Apr 25, 2024Apr 25, 2024

• clamp

  Public
  Clinical Language Annotation, Modeling, and Processing Toolkit

  Apache License 2.0

  •0•0•0•0•Updated Apr 17, 2024Apr 17, 2024

• bike

  Public
  Biomedical Knowledge Explorer

  HTML

  •0•2•0•0•Updated Apr 8, 2024Apr 8, 2024

• section_specific_annotation_of_PICO

  Public
  Towards precise PICO extraction from ab-stracts of randomized controlled trials using a section-specific learning approach

  Jupyter Notebook

  •0•1•2•0•Updated Mar 18, 2024Mar 18, 2024

• BioNER-LLaMA

  Public
  Apache License 2.0

  •0•11•0•0•Updated Mar 16, 2024Mar 16, 2024

• .github

  Public
  Clinical NLP Lab

  Apache License 2.0

  •0•0•0•0•Updated Feb 28, 2024Feb 28, 2024

• medical-evaluation

  Public
  Python

  •

  MIT License

  •1•1•0•0•Updated Feb 23, 2024Feb 23, 2024