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Issues list

SBML parsing fails on invalid GPRs SBML Related to reading and writing SBML models.
#1394 opened Jun 4, 2024 by tamascogustavo
1 task done
1
[Feature] Nullspace calculation similar to COBRA (MATLAB) enhancement
#1393 opened May 29, 2024 by dagl1
1 task done
8
Gapfilling failed in context manager (infeasible)
#1392 opened May 28, 2024 by wshao1
1 task done
1
I cannot install Cobrapy in Anacoda I get this error "chr(c) # raise ValueError for invalid code error: incomplete escape \U at position 28" What should I do? needs information Lacks requires information or a reproducible example to be addressed. stale The issue or pull request lacks activity.
#1391 opened May 21, 2024 by zahraaaaaaaaaaaaaaaaaaaa
1 task done
1
Stable release of docs broken [BUG] bug
#1379 opened Feb 20, 2024 by gregmedlock
1 task done
1
problems reading certain AGORA2 models
#1326 opened Apr 13, 2023 by eugenibc
3
Fetch available models from Web IO repositories. enhancement
#1284 opened Sep 21, 2022 by achillesrasquinha
1 task
1
Add EMBL GEMs to Web IO Repository.
#1281 opened Sep 20, 2022 by achillesrasquinha
1 task done
1
Showing progress during flux variability analysis.
#1279 opened Sep 19, 2022 by achillesrasquinha
1 task
2
3
Neater notebook representation of Model Objects
#1277 opened Sep 19, 2022 by achillesrasquinha
1 task done
1
1
inconsistency in FBA flavour invocations enhancement good first issue This should be a good issue to start contributing to COBRApy. help-wanted An issue that should be easy to implement for anyone in the community.
#1248 opened Jul 13, 2022 by lptolik
can not charge model in Memote needs information Lacks requires information or a reproducible example to be addressed.
#1232 opened Jun 8, 2022 by mascencio27
3
FastCC results differ from respective MATLAB function bug
#1154 opened Feb 21, 2022 by NantiaL
6
read_sbml_model does not substitute legacy SBML placeholders anymore SBML Related to reading and writing SBML models.
#1149 opened Feb 3, 2022 by rtsantos3
10
Allow formatting/content options to be set in the model summary constructor enhancement
#1119 opened Oct 5, 2021 by cdiener
1 task done
@cdiener
2
Reaction.summary() broken for some models
#1118 opened Sep 24, 2021 by cdiener
@cdiener
6
Refactor some core funtionality to ease the extension of cobrapy by third parties
#1087 opened May 10, 2021 by carrascomj
1 task done
7
community SBML model is not being read
#1075 opened Apr 6, 2021 by shumantov
4
Cannot deepcopy models with gurobipy with BiGG id st
#1072 opened Apr 4, 2021 by sirno
3
Remove unused cobra.flux_analysis.reaction module
#1069 opened Mar 24, 2021 by synchon
3 tasks done
@synchon
Exchanges and external compartment don't match in models with SBO terms
#1053 opened Mar 10, 2021 by cdiener
@cdiener
3
Update SBML and model loading information with details on processing
#1044 opened Feb 17, 2021 by matthiaskoenig
@matthiaskoenig
3
Automatically run benchmarks using GitHub Actions help-wanted An issue that should be easy to implement for anyone in the community.
#998 opened Aug 29, 2020 by Midnighter
6
Make use of the public cplex package from PyPI that has limited model solving capabilities enhancement help-wanted An issue that should be easy to implement for anyone in the community.
#986 opened Aug 13, 2020 by Midnighter
SBML importer drops reversibility information for reactions not FBC format SBML Related to reading and writing SBML models.
#976 opened Jul 27, 2020 by davidtourigny
@matthiaskoenig
5
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