FASTQ4J

Java Utilities for the FASTQ file format

Examples

Stream<Sequence> sequences = FASTQUtils.read()
                                       .from(new File("some_file.fastq"))
                                       .getSequences();                                      

Maven Snapshots

<dependency>
  <groupId>org.omnaest.genomics</groupId>
  <artifactId>FASTQ4J</artifactId>
  <version>0.0.1-SNAPSHOT</version>
</dependency>

<repositories>
    <repository>
        <id>ossrh</id>
        <url>https://oss.sonatype.org/content/repositories/snapshots</url>
        <snapshots>
            <enabled>true</enabled>
        </snapshots>
    </repository>
</repositories>