Add 2024-09-24.md and 2024-10-01.md

2024/2024-09-24.md

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+---
+tags: Tuesday
+---
+
+# 2024-09-24
+
+Attending: Will, Dom, Jason, JM, Petr, Maadhav, Frances, Seb, Khaled, Kyle, Melissa, David S, Chris, Erin, 
+
+Start: 2:00 pm UK
+
+## Accepting minutes from [last meeting](https://hackmd.io/team/ome?nav=overview)
+
+## Project Status
+
+(2-3 minutes each)
+
+- IDR Frances: working on study idr0158, human lymph node sections. Lots of antibodies, e.g 30-40 per image. Submitter used antibody kits. One ID (links to kit) includes several names/targets. Need to update antibody annotations: Name and Identifier (similar to Genes). Will affect search and gallery. Previously, antibody search was by ID. Needs to include search by target name.
+    - NGFF challenge: idr0157, idr0090, idr0044 done, and some others ongoing... See NGFF below.
+
+- OMERO
+    - systems have been down. Back to normal now.
+
+- Bio-Formats - Melissa: ome model issues reviewed, See https://docs.google.com/document/d/1twj5KHNZsOSkvDYqTtGdegor8IIwvcD2xOTa376i7Uc/edit. Schema update TBD. Feedback on the doc.
+    - Seb: imaris response in prep
+
+- NGFF
+    - Will: ngff-challenge, focussing on [viewing results](https://samples-viewer--ome2024-ngff-challenge.netlify.app/?csv=https://raw.githubusercontent.com/will-moore/ome2024-ngff-challenge/samples_viewer/samples/ngff_samples.csv). Feedback welcome, e.g. [on the PR](https://github.com/ome/ome2024-ngff-challenge/pull/50).
+    - Jason: link to ngff-challenge data from IDR
+
+- GerBI
+
+- Glencoe
+    - Chris: OMERO.tables API investigation wrt using other storage solutions in place of py-tables. Seb: API is poorly documented. Works for omero-web usage, but other edge-cases and uses are possible via API. Can get unexpected results. 
+    - Erin: blog post in progress with content presented at recent meeting SBI2.  https://www.glencoesoftware.com/blog/2024/09/18/complex-workflows.html 
+
+- Community
+    - OME systems update (hardware issue on Saturday): JM: all systems are back up.
+        - Migration will continue once a faulty component is replaced (unrelated)
+    - Wellcome Funding update. -> May 2029. File formats and IDR. Maturing OME-NGFF spec, including metadata. Multi-modal and correlative imaging - modelling and viz. See proposal in docs.
+        - [Original Wellcome Call](https://wellcome.org/grant-funding/schemes/bioimaging-technology-development-awards)
+
+## AOB
+
+(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
+    - OME resource Migration Plan
+
+## Main Topic
+
+(20-25 minutes plus 15 minutes questions max)

2024/2024-10-01.md

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+---
+tags: Tuesday
+---
+
+# 2024-10-01
+
+Attending: Dom, Frances, Petr, Andreas, Khaled, Kyle, Josh, Jason, Seb, Chris, Melissa, Erin, David
+
+Start: 2:00 pm UK
+
+## Accepting minutes from [last meeting](https://hackmd.io/team/ome?nav=overview)
+
+## Project Status
+
+(2-3 minutes each)
+
+- IDR
+  - Continue Antibody Mapr work. 
+  - Branding for NGFF challenge. 
+  - Meeting on search/gallery for antibody name Thursday.
+  - New submission, will be asked to convert to Zarr (v2).
+
+- OMERO
+  - More discussions about patch release for web
+
+- Bio-Formats
+  - Discussed timeline for 8.0.0, planed for Oct. ???
+  - Bitplane 
+
+- NGFF
+  - Challenge:
+    - status: few hundred TBs
+    - stragglers
+    - few minor issues: BDV, tensorstore, FLIM
+    - presentation at I2K, GBI, etc.
+    - Plan to present update? Josh: NFDI and I2K
+    - JRS: at CZI on October 16th. connect on taglines.
+  - RFC updates
+    - RFC-1: (RFC) waiting on reviewer responses
+    - RFC-2: (v3) accepted. spec & implementations (Seb's 6 month estimate)
+    - RFC-3: (n-dim) basically ready; to be sent for review.
+      - SB: inclined to get RFC-2 out alone.
+      - JRS: will discuss on Monday from IDR POV.
+    - RFC-4: (orientation):  have list of reviewers
+    - RFC-5: (transforms):  have list of reviewers
+
+
+- GerBI
+  - Josh: Working on various workshops. Collaborating on training material, see mailling list.
+
+- Glencoe
+  - Chris: Omero.tables; Meeting this week.
+  - David: 5min talk at conference (ELRIG Drug discovery, London), accompanied by blog post.
+
+- Community
+    - BioImage Archive SAB Meeting this week; JRS: discussion with Matthew about direction of projects, conversions, data storage, etc.
+    - OME Funding: Wellcome, 2x UKRI, +1 more UKRI; Kick off team meeting to be scheduled some time Nov.
+    - Kobe -> 2 day OMERO workshop November 2024 (+ OMERO installation), FoundingGide pre-meeting, and hackathon (4th Nov). Installation, imaging workflows, analysis.
+    - Brno - December, 1 day workshop
+
+## AOB
+
+- UoD IT. Petr: Migration to ESS will happen tomorrow. Testing was ok. Centos to RHEL9 is finished, except 2 machines: merge-ci (too big for UoD IT), ome website vm (in progress). merge-ci will need our own hardware/box. JRS: Will have funds for hardware.
+
+(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
+
+## Main Topic
+
+(20-25 minutes plus 15 minutes questions max)