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| tags: Tuesday | ||
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| # 2024-02-13 | ||
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| Attending: Will, Dom, Petr, Frances, Josh, June, JM, Kevin, Jason, David S, Chris, Tom, Khaled, David, Maadhav, Melissa, Andreas, Kyle, | ||
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| Start: 2:00 pm UK | ||
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| ## Accepting minutes from [last meeting](https://hackmd.io/team/ome?nav=overview) | ||
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| ## Project Status | ||
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| (2-3 minutes each) | ||
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| - IDR (Frances): | ||
| - NGFF issues: Khaled installing microservices working on idr-testing. | ||
| - Need to regenerate cache. Will: Deleting first... | ||
| - Chris: Just move it first, then can delete later | ||
| - David working on ZarrReader memo file generation | ||
| - e.g. idr0090 has large memo files ~110M slow to load. | ||
| - Lots of structured annotations from nd2 file | ||
| - Stripping back annotations gives smaller file and this appears faster to load (testing with idr0090) | ||
| - zipkin.io tracing used by Glencoe for microservices | ||
| - Needs quite a bit of work to function properly | ||
| - Josh: would like low-cost option to improve situation | ||
| - Chris: can be more trouble than it's worth | ||
| - Kevin: then you need prometheus & grafana to aggregate. Big ecosystem! Maintenance admin burden. | ||
| - Chris: limited opensource tools. Better solutions have costs. | ||
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| - OMERO | ||
| - testing Python https://docs.google.com/spreadsheets/d/1zI3vlcTLp7okz_Mi2LHK40NxwCkGXUGHgDqgCd7jP_A/edit#gid=1254367109 (omero-py and omero-web python 3.12 support). Needs more testers (see sheet and add name). | ||
| - Aim for Thursday? Using merge-ci server. | ||
| - When done, can migrate merge-ci to RHEL9. | ||
| - Petr: can test async - don't need to be on same call. | ||
| - JM: add name to sheet, and test in your own time. | ||
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| - Bio-Formats | ||
| - 7.2.0 released last week. svs and czi changes. | ||
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| - NGFF (Josh) | ||
| - NGFF office hours on Wednesdays | ||
| - NGFF RFC status update. RFC1 (current) and RFC0 (previous) | ||
| - zarr-python: discord :arrow_right: zulip - common hosting | ||
| - https://github.com/ome/ome-ngff-validator/pull/32 - implementing transforms etc ahead of spec being finalised | ||
| - JM: automated testing of validator? | ||
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| - GerBI (Tom) | ||
| - Analysing histology data in Fiji use-case. Pierre Pouchin. Failing to load all data into memory. Trying to load regions | ||
| - https://github.com/GReD-Clermont/omero_macro-extensions/pull/19 | ||
| - JM: good to add this to our guides | ||
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| - Glencoe (Chris) | ||
| - Bio-Formats working with regions of interest is tricky. | ||
| - Single sign-on with light Admin - web with sudo'd sessions. | ||
| - poor handling of long usernames and passwords. | ||
| - TileDB research with OMERO.tables. Preparing data on s3. Links to come | ||
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| - Community | ||
| - Jason: The wonderful OME Community Meeting. Community interested. Limited room availability. Checking dates around end of May. | ||
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| ## AOB | ||
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| (5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled) | ||
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| ## Main Topic | ||
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| (20-25 minutes plus 15 minutes questions max) |