Assistant Professor at the AMC. I work mainly on quantitative MRI for cancer imaging, and most of the scripts will be related to this topic.
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PCA_denoising
PCA_denoising PublicThe PCA denoising matlab algorithm used in the publication "Principal component analysis for fast and model-free denoising of multi b-value diffusion-weighted MR images" by Oliver J Gurney-Champion…
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IVIM_tools
IVIM_tools PublicMatlab tools for intravoxel incoherent motion (IVIM) data, including kurtosis, stretched exponential, tri-exponential, mono-exponential and segmented fits in Matlab
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Elastix_Matlab_wapper
Elastix_Matlab_wapper PublicA very quick and dirty simple wrapper for Elastix. Still requires a elastix installation. Also requires you to define the fitting parameters yourself in a text file. Handy in post processing scripts.
MATLAB 1
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Nifti_and_Dicom
Nifti_and_Dicom PublicSome tools I use to read and write NIFTI and Dicom files.
MATLAB
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