This project consist of 4 scripts that are written to generate a phylogenetic relationship using UPGMA method for the series of data provided. This doesn't use bio-pyhton module and hence is a from the scratch aprroach for acheiving the said requirement.
A tabular representation is provided below.
| Script Name | Input | Ouput |
|---|---|---|
| dnadm | DNA sequence in Fasta format | Distance Matrix in CSV format |
| dnaupgma | Distance Matrix in CSV format | Phylogenetic relation |
| proteindm | Protein sequence in Fasta format and BLOSUM matrix in CSV | Distance Matrix in CSV format |
| proteinupgma | Distance Matrix in CSV format | Phylogenetic relation |
By default the naming convention used are Ndistance and Pdistance for distance matrix produced and BLOSUM62 for the protien score card. You can change it to whatever you want.
It reuqires python3 and is tested to be working on Windows and Linux (debian).