Please use CBNplot.
Plot bayesian network inferred from expression data based on the enrichment analysis results from libraries including clusterProfiler
and ReactomePA
using bnlearn
.
library(devtools)
install_github("noriakis/cpbnplot")
- Documentation: https://noriakis.github.io/software/cpbnplot/
bladder_cancer.ipynb
: the example using bladder cancer dataset (GSE133624).
- The gene-to-gene relationship compared with the reference network.
- The plot is customizable highliting edges and nodes like hub genes.
- Another customized plot.