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Merge pull request #6 from nmfs-opensci/delete
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update quarto_titlepages to 3.3.10
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@eeholmes
eeholmes authored Feb 7, 2024
2 parents 00b0f9e + d60399d commit 8083296
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190 changes: 103 additions & 87 deletions An-example-tech-memo.tex
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open=any]{scrbook}

\usepackage{amsmath,amssymb}
\usepackage{lmodern}
\usepackage{iftex}
\ifPDFTeX
\usepackage[T1]{fontenc}
Expand All @@ -19,6 +18,10 @@
\defaultfontfeatures{Scale=MatchLowercase}
\defaultfontfeatures[\rmfamily]{Ligatures=TeX,Scale=1}
\fi
\usepackage{lmodern}
\ifPDFTeX\else
% xetex/luatex font selection
\fi
% Use upquote if available, for straight quotes in verbatim environments
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
\IfFileExists{microtype.sty}{% use microtype if available
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\makeatletter
\def\fps@figure{htbp}
\makeatother
% definitions for citeproc citations
\NewDocumentCommand\citeproctext{}{}
\NewDocumentCommand\citeproc{mm}{%
\begingroup\def\citeproctext{#2}\cite{#1}\endgroup}
\makeatletter
% allow citations to break across lines
\let\@cite@ofmt\@firstofone
% avoid brackets around text for \cite:
\def\@biblabel#1{}
\def\@cite#1#2{{#1\if@tempswa , #2\fi}}
\makeatother
\newlength{\cslhangindent}
\setlength{\cslhangindent}{1.5em}
\newlength{\csllabelwidth}
\setlength{\csllabelwidth}{3em}
\newlength{\cslentryspacingunit} % times entry-spacing
\setlength{\cslentryspacingunit}{\parskip}
\newenvironment{CSLReferences}[2] % #1 hanging-ident, #2 entry spacing
{% don't indent paragraphs
\setlength{\parindent}{0pt}
\newenvironment{CSLReferences}[2] % #1 hanging-indent, #2 entry-spacing
{\begin{list}{}{%
\setlength{\itemindent}{0pt}
\setlength{\leftmargin}{0pt}
\setlength{\parsep}{0pt}
% turn on hanging indent if param 1 is 1
\ifodd #1
\let\oldpar\par
\def\par{\hangindent=\cslhangindent\oldpar}
\setlength{\leftmargin}{\cslhangindent}
\setlength{\itemindent}{-1\cslhangindent}
\fi
% set entry spacing
\setlength{\parskip}{#2\cslentryspacingunit}
}%
{}
\setlength{\itemsep}{#2\baselineskip}}}
{\end{list}}
\usepackage{calc}
\newcommand{\CSLBlock}[1]{#1\hfill\break}
\newcommand{\CSLLeftMargin}[1]{\parbox[t]{\csllabelwidth}{#1}}
\newcommand{\CSLRightInline}[1]{\parbox[t]{\linewidth - \csllabelwidth}{#1}\break}
\newcommand{\CSLBlock}[1]{\hfill\break#1\hfill\break}
\newcommand{\CSLLeftMargin}[1]{\parbox[t]{\csllabelwidth}{\strut#1\strut}}
\newcommand{\CSLRightInline}[1]{\parbox[t]{\linewidth - \csllabelwidth}{\strut#1\strut}}
\newcommand{\CSLIndent}[1]{\hspace{\cslhangindent}#1}

\usepackage{amsmath}
\usepackage{booktabs}
\usepackage{caption}
\usepackage{longtable}
\usepackage[default]{opensans}
\fontseries{lc}\selectfont
\definecolor{nmfsblue1}{HTML}{00467f}
\definecolor{nmfsblue2}{HTML}{007eb2}
\makeatletter
\makeatother
\makeatletter
\@ifpackageloaded{bookmark}{}{\usepackage{bookmark}}
\makeatother
\makeatletter
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\newcommand*\listoflistings{\listof{codelisting}{List of Listings}}
\makeatother
\makeatletter
\@ifpackageloaded{caption}{}{\usepackage{caption}}
\@ifpackageloaded{subcaption}{}{\usepackage{subcaption}}
\makeatother
\makeatletter
\@ifpackageloaded{tcolorbox}{}{\usepackage[many]{tcolorbox}}
\makeatother
\makeatletter
\@ifundefined{shadecolor}{\definecolor{shadecolor}{rgb}{.97, .97, .97}}
\makeatother
\makeatletter
\@ifpackageloaded{caption}{}{\usepackage{caption}}
\@ifpackageloaded{subcaption}{}{\usepackage{subcaption}}
\makeatother

\usepackage{hyphenat}
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\usepackage[pagecolor=none]{pagecolor}



% Set the titlepage font families


Expand All @@ -187,10 +187,6 @@

% Set the coverpage font families





\ifLuaTeX
\usepackage{selnolig} % disable illegal ligatures
\fi
Expand All @@ -213,7 +209,7 @@
\subtitle{The subtitle}
\author{Jane Doe \and Eva Nováková \and Matti Meikäläinen \and Ashok
Kumar}
\date{1/1/23}
\date{2023-01-01}

\begin{document}
%%%%% begin titlepage extension code
Expand Down Expand Up @@ -246,8 +242,7 @@
\newcommand{\titlelocationbottom}{7in}
\newcommand{\titlealign}{left}

\begin{scope}
{%
\begin{scope}{%
\fontsize{50}{60.0}\selectfont
\node[anchor=north
west, align=left, rotate=0] (Title1) at ($(current page.south west)+(\titlelocationleft,\titlelocationbottom)$) [text width = 5in] {\textcolor{nmfsblue1}{\nohyphens{An
Expand Down Expand Up @@ -302,6 +297,20 @@
}
\end{scope}

% Date
\newcommand{\datelocationleft}{6in}
\newcommand{\datelocationbottom}{2in}
\newcommand{\datelocationalign}{left}

\begin{scope}
{%
\fontsize{20}{24.0}\selectfont
\node[anchor=north west, align=left, rotate=0] (Date1) at %
($(current page.south west)+(\datelocationleft,\datelocationbottom)$) [text width = 2.5in] {{\nohyphens{January
2023}}};
}
\end{scope}

\end{tikzpicture}
\clearpage
\restoregeometry
Expand Down Expand Up @@ -343,34 +352,32 @@
\newcommand{\affiliationstyle}[1]{{#1}}

\newcommand{\titlepageauthorblock}{
\authorstyle{Jane
Doe{\textsuperscript{1}}\textsuperscript{,}{\textsuperscript{2}}, Eva
Nováková{\textsuperscript{2}}, Matti
Meikäläinen{\textsuperscript{3}}\textsuperscript{,}{\textsuperscript{*}} and Ashok
Kumar{\textsuperscript{4}}\textsuperscript{,}{\textsuperscript{5}}%

}}
{\authorstyle{\nohyphens{Jane
Doe}{\textsuperscript{1}}\textsuperscript{,}{\textsuperscript{2}}, \nohyphens{Eva
Nováková}{\textsuperscript{2}}, \nohyphens{Matti
Meikäläinen}{\textsuperscript{3}}\textsuperscript{,}{\textsuperscript{*}} and \nohyphens{Ashok
Kumar}{\textsuperscript{4}}\textsuperscript{,}{\textsuperscript{5}}}}}

\newcommand{\titlepageaffiliationblock}{
\hangindent=1em
\hangafter=1
\affiliationstyle{
{1}.~Northwest Fisheries Science Center, Conservation Biology
Division, 2725 Montlake Boulevard EastSeattle, Washington 98112
\par\hangindent=1em\hangafter=1%
{2}.~University of Washington, School of Aquatic and Fisheries Sciences
\par\hangindent=1em\hangafter=1%
{3}.~University of Kemijärvi, Department of Biological and Environmental
Science, Kylmäniementie 79, 98120, KEMIJÄRVI, Finland
\par\hangindent=1em\hangafter=1%
{4}.~University of Minnesota, Department of Mathematics
\par\hangindent=1em\hangafter=1%
{5}.~HØnefoss Institute, R Tradição 35, Portugal 2950-726
{\affiliationstyle{
{1}.~Northwest Fisheries Science Center,~Conservation Biology
Division,~2725 Montlake Boulevard EastSeattle, Washington 98112
\par\hangindent=1em\hangafter=1{2}.~University of Washington,~School of
Aquatic and Fisheries Sciences
\par\hangindent=1em\hangafter=1{3}.~University of Kemijärvi,~Department
of Biological and Environmental Science,~Kylmäniementie 79, 98120,
KEMIJÄRVI, Finland
\par\hangindent=1em\hangafter=1{4}.~University of Minnesota,~Department
of Mathematics
\par\hangindent=1em\hangafter=1{5}.~HØnefoss Institute,~R Tradição 35,
Portugal 2950-726


\vspace{1\baselineskip}
* \textit{Correspondence:}~Matti Meikälä[email protected]
}
}}
}
\newcommand{\headerstyled}{%
{}
Expand All @@ -379,7 +386,7 @@
{}
}
\newcommand{\datestyled}{%
{1/1/23}
{2023-01-01}
}


Expand Down Expand Up @@ -483,8 +490,7 @@
\setcounter{page}{1}
\end{frontmatter}

%%%%% end titlepage extension code\ifdefined\Shaded\renewenvironment{Shaded}{\begin{tcolorbox}[frame hidden, borderline west={3pt}{0pt}{shadecolor}, enhanced, breakable, sharp corners, interior hidden, boxrule=0pt]}{\end{tcolorbox}}\fi

%%%%% end titlepage extension code
\renewcommand*\contentsname{Table of contents}
{
\setcounter{tocdepth}{1}
Expand All @@ -495,8 +501,7 @@
\mainmatter
\bookmarksetup{startatroot}

\hypertarget{citation}{%
\chapter*{Citation}\label{citation}}
\chapter*{Citation}\label{citation}
\addcontentsline{toc}{chapter}{Citation}

\markboth{Citation}{Citation}
Expand All @@ -506,8 +511,11 @@ \chapter*{Citation}\label{citation}}

\bookmarksetup{startatroot}

\hypertarget{a-chapter}{%
\chapter{A chapter}\label{a-chapter}}
\chapter{A chapter}\label{a-chapter}

\bookmarksetup{startatroot}

\chapter{Columbia River Chum}\label{columbia-river-chum}

Lorem ipsum dolor sit amet, consectetur adipiscing elit. Clark (1993)
vitae ante quis dui egestas fringilla ac vitae justo (Ansley and Davis
Expand All @@ -530,8 +538,7 @@ \chapter{A chapter}\label{a-chapter}}
bibendum. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Fusce
viverra nulla elementum libero mollis, quis cursus velit sagittis.

\hypertarget{general-location}{%
\section{General location}\label{general-location}}
\section{General location}\label{general-location}

Morbi iaculis eget augue eget facilisis. Etiam non orci dignissim,
efficitur purus viverra, pellentesque neque. Aliquam ornare, magna ut
Expand All @@ -540,18 +547,19 @@ \section{General location}\label{general-location}}

\begin{figure}

{\centering \includegraphics[width=4.48in,height=\textheight]{text/../images/fig-map.png}
\centering{

\includegraphics[width=4.48in,height=\textheight]{text/../images/fig-map.png}

}

\caption{\label{fig-map}Morbi iaculis eget augue eget facilisis. Etiam
non orci dignissim, efficitur purus viverra, pellentesque neque. Aliquam
ornare, magna ut dictum mollis.}

\end{figure}
\end{figure}%

\hypertarget{recent-trends}{%
\section{Recent trends}\label{recent-trends}}
\section{Recent trends}\label{recent-trends}

Lorem ipsum dolor sit amet, consectetur adipiscing elit. Donec vitae
ante quis dui egestas fringilla ac vitae justo. Pellentesque quis magna
Expand All @@ -575,28 +583,32 @@ \section{Recent trends}\label{recent-trends}}

\begin{figure}

{\centering \includegraphics{text/Chapter1_files/figure-pdf/fig-CRchum-status-1.pdf}
\centering{

\includegraphics{text/Chapter1_files/figure-pdf/fig-CRchum-status-1.pdf}

}

\caption{\label{fig-CRchum-status}Columbia River Chum. Log spawner count
trends.}

\end{figure}
\end{figure}%

\hypertarget{population-raw-data}{%
\section{Population raw data}\label{population-raw-data}}
\section{Population raw data}\label{population-raw-data}

The raw data can be found in Table~\ref{tbl-CRchum-rawdata}. Nunc quis
euismod felis. Vestibulum gravida nisi mi, quis mollis velit ullamcorper
non. Aliquam tempus fringilla bibendum. Lorem ipsum dolor sit amet,
consectetur adipiscing elit. Fusce viverra nulla elementum libero
mollis, quis cursus velit sagittis.

\hypertarget{tbl-CRchum-rawdata}{}
\begin{longtable}{rr}
\caption{\label{tbl-CRchum-rawdata}Columbia River Chum. Raw Data. }\tabularnewline
\begin{table}

\caption{\label{tbl-CRchum-rawdata}Columbia River Chum. Raw Data.}

\centering{

\begin{longtable*}{rr}
\toprule
YEAR & NUMBER\_OF\_SPAWNERS \\
\midrule
Expand Down Expand Up @@ -635,12 +647,17 @@ \section{Population raw data}\label{population-raw-data}}
2014 & 4792 \\
2015 & 11580 \\
\bottomrule
\end{longtable}
\end{longtable*}

}

\end{table}%

\bookmarksetup{startatroot}

\hypertarget{conclusion}{%
\chapter{Conclusion}\label{conclusion}}
\chapter{Conclusion}\label{conclusion}

\section{First off}\label{first-off}

We want to reference the Interior Columbia Upper Columbia Entiat
population Table~\ref{tbl-CRchum-rawdata}. It is in Lorem ipsum dolor
Expand Down Expand Up @@ -690,38 +707,37 @@ \chapter{Conclusion}\label{conclusion}}

\bookmarksetup{startatroot}

\hypertarget{references}{%
\chapter*{References}\label{references}}
\chapter*{References}\label{references}
\addcontentsline{toc}{chapter}{References}

\markboth{References}{References}

\hypertarget{refs}{}
\phantomsection\label{refs}
\begin{CSLReferences}{1}{0}
\leavevmode\vadjust pre{\hypertarget{ref-ansley1981}{}}%
\bibitem[\citeproctext]{ref-ansley1981}
Ansley, H. L. H., and C. D. Davis. 1981. {``Migration and Standing Stock
of Fishes Associated with Artificial and Natural Reefs on Georgia{'}s
Outer Continental Shelf.''} Brunswick, Georgia, USA.

\leavevmode\vadjust pre{\hypertarget{ref-clark1993}{}}%
\bibitem[\citeproctext]{ref-clark1993}
Clark, W. G. 1993. {``The Effect of Recruitment Variability on the
Choice of a Target Level of Spawning Biomass Per Recruit.''} In, 233246.
Alaska Sea Grant College Program
AK{\textendash}SG{\textendash}93{\textendash}02.

\leavevmode\vadjust pre{\hypertarget{ref-collins1996}{}}%
\bibitem[\citeproctext]{ref-collins1996}
Collins, M. R., S. B. Van Sant, D. J. Schmidt, and G. R. Sedberry. 1996.
{``Age Validation, Movements, and Growth Rates of Tagged Gag
(Mycteroperca Microlepis), Black Sea Bass (Centropristis Striata) and
Red Porgy (Pagrus Pagrus).''} In, edited by F. Arrequin-Sanchez, J. L.
Munro, M. C. Balgos, and D. Pauly, 161--65. Makati City, Philippines:
ICLARM (International Center for Living Aquatic Resources Management).

\leavevmode\vadjust pre{\hypertarget{ref-deuel1968}{}}%
\bibitem[\citeproctext]{ref-deuel1968}
Deuel, D. G., and J. R. Clark. 1968. {``The 1965 Salt-Water Angling
Survey.''}

\leavevmode\vadjust pre{\hypertarget{ref-hardy1978}{}}%
\bibitem[\citeproctext]{ref-hardy1978}
Hardy, J. D., Jr. 1978. {``Development of Fishes of the Mid-Atlantic
Bight. Vol. III. Aphredoderidae Through Rachycentridae.''}

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