Merge pull request #444 from nismod/dependabot/npm_and_yarn/src/smif/… #22

	name: Test Python package

	on: [push]

	jobs:
	test:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.8", "3.11"]

	services:
	postgres:
	# Docker Hub image
	image: postgres
	env:
	POSTGRES_PASSWORD: postgres
	# Set health checks to wait until postgres has started
	options: >-
	--health-cmd pg_isready
	--health-interval 10s
	--health-timeout 5s
	--health-retries 5
	ports:
	# Maps tcp port 5432 on service container to the host
	- 5432:5432

	steps:
	- uses: actions/checkout@v3
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install flake8 pytest pytest-cov
	if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
	pip install -e .
	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: Test with pytest
	run: \|
	psql -c 'create database test_smif;' -U postgres
	pytest --cov-report html --cov=smif tests/
	env:
	PGHOST: localhost
	PGPORT: 5432
	PGPASSWORD: postgres
	PGUSER: postgres

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